miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 13764 0.67 0.656776
Target:  5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3'
miRNA:   3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 29891 0.66 0.690715
Target:  5'- cACCcCCcCCGGCAUGAcaggccguaccAGUuCGCGCa -3'
miRNA:   3'- aUGGcGGcGGUUGUACU-----------UCAuGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 13346 0.66 0.679446
Target:  5'- -gUCGCCGCC-----GAAGU-CGCGCa -3'
miRNA:   3'- auGGCGGCGGuuguaCUUCAuGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 3897 0.66 0.679446
Target:  5'- -gUCGCCGCCGAacuUGGuagauuucuucGGggACGCGCu -3'
miRNA:   3'- auGGCGGCGGUUgu-ACU-----------UCa-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5890 0.66 0.679446
Target:  5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3'
miRNA:   3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 34687 0.66 0.672661
Target:  5'- -uUCGUCGCCAACAgcaagccggccgccGAGcGUGCGCuGCa -3'
miRNA:   3'- auGGCGGCGGUUGUa-------------CUU-CAUGCG-CG- -5'
26620 5' -53.9 NC_005357.1 + 34845 0.66 0.666996
Target:  5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCg -3'
miRNA:   3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 18046 0.66 0.713059
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40277 0.66 0.713059
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 32382 0.66 0.724109
Target:  5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3'
miRNA:   3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 19049 0.68 0.599869
Target:  5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3'
miRNA:   3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 1057 0.67 0.611233
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 42117 0.67 0.611233
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18548 0.67 0.621477
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16615 0.67 0.622616
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 4172 0.67 0.634008
Target:  5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3'
miRNA:   3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 10543 0.66 0.701923
Target:  5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3'
miRNA:   3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5'
26620 5' -53.9 NC_005357.1 + 35064 0.67 0.645399
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5467 0.67 0.649952
Target:  5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3'
miRNA:   3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 15569 0.66 0.724109
Target:  5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3'
miRNA:   3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.