miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 19635 0.66 0.713059
Target:  5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3'
miRNA:   3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5'
26620 5' -53.9 NC_005357.1 + 8120 0.66 0.713059
Target:  5'- cACCGCgCgGCCGGCGUu-GGUuguggGCGUGCg -3'
miRNA:   3'- aUGGCG-G-CGGUUGUAcuUCA-----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18046 0.66 0.713059
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40277 0.66 0.713059
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 32382 0.66 0.724109
Target:  5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3'
miRNA:   3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5890 0.66 0.679446
Target:  5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3'
miRNA:   3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 34845 0.66 0.666996
Target:  5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCg -3'
miRNA:   3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 32448 0.67 0.661321
Target:  5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3'
miRNA:   3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 4172 0.67 0.634008
Target:  5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3'
miRNA:   3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 23460 0.67 0.634008
Target:  5'- cGCgCGUacaCGCCGGCGUGGaacaGGUGCGcCGUg -3'
miRNA:   3'- aUG-GCG---GCGGUUGUACU----UCAUGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 24902 0.67 0.634008
Target:  5'- --aCGCgCGCCGGaAUGAAcGUGCGCGa -3'
miRNA:   3'- augGCG-GCGGUUgUACUU-CAUGCGCg -5'
26620 5' -53.9 NC_005357.1 + 30138 0.67 0.634008
Target:  5'- cGCCGCCgGCCugcaccgcgucgGACAUcagcGGcAGUugGCGCc -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUA----CU-UCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 36327 0.67 0.634008
Target:  5'- cACCGuuG-CGACAUGcgcAAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCgGUUGUAC---UUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 4265 0.67 0.634008
Target:  5'- gGCCGUcagCGCCGGCAUGGugauGgcCGUGUc -3'
miRNA:   3'- aUGGCG---GCGGUUGUACUu---CauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 27854 0.67 0.634008
Target:  5'- cGCCGCUGCUcaagAACGUGuc---CGCGCu -3'
miRNA:   3'- aUGGCGGCGG----UUGUACuucauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 37004 0.67 0.634008
Target:  5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3'
miRNA:   3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5'
26620 5' -53.9 NC_005357.1 + 8630 0.67 0.640844
Target:  5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3'
miRNA:   3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 35064 0.67 0.645399
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5467 0.67 0.649952
Target:  5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3'
miRNA:   3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 13764 0.67 0.656776
Target:  5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3'
miRNA:   3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.