miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 10543 0.66 0.701923
Target:  5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3'
miRNA:   3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5'
26620 5' -53.9 NC_005357.1 + 38399 0.66 0.701923
Target:  5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3'
miRNA:   3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5'
26620 5' -53.9 NC_005357.1 + 34845 0.66 0.666996
Target:  5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCg -3'
miRNA:   3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 30429 0.66 0.66813
Target:  5'- cGCUGCUgGCCGACGUGGaaaAGgccaagauUGCGCa -3'
miRNA:   3'- aUGGCGG-CGGUUGUACU---UCau------GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18046 0.66 0.713059
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40277 0.66 0.713059
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 6415 0.66 0.701923
Target:  5'- -gUCGCgGCC--CAUGucGUugGCGCc -3'
miRNA:   3'- auGGCGgCGGuuGUACuuCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 4172 0.67 0.634008
Target:  5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3'
miRNA:   3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 32448 0.67 0.661321
Target:  5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3'
miRNA:   3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16615 0.67 0.622616
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18548 0.67 0.621477
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8965 0.67 0.611233
Target:  5'- gUGCCGCgauaGCCAGCGUGGc---CGUGCc -3'
miRNA:   3'- -AUGGCGg---CGGUUGUACUucauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5363 0.67 0.634008
Target:  5'- gGCCGCCugcaccgcGCCcaggguUAUGucacuGGUGCGCGCc -3'
miRNA:   3'- aUGGCGG--------CGGuu----GUACu----UCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 9012 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 9156 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 9204 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 33853 0.67 0.641983
Target:  5'- gGCCGCaCGCgCGGCcuacgacgcccaggAUGAGGUcgaGCGCg -3'
miRNA:   3'- aUGGCG-GCG-GUUG--------------UACUUCAug-CGCG- -5'
26620 5' -53.9 NC_005357.1 + 9060 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 1057 0.67 0.611233
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 42117 0.67 0.611233
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.