Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26622 | 5' | -59.5 | NC_005357.1 | + | 42040 | 1.09 | 0.000291 |
Target: 5'- aGUCGCGCGCUGGCCGCGCUCAAUCGGc -3' miRNA: 3'- -CAGCGCGCGACCGGCGCGAGUUAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 6730 | 0.78 | 0.068553 |
Target: 5'- -cCGCuGCGCUGggccGCCGCGCUCAAUagCGGa -3' miRNA: 3'- caGCG-CGCGAC----CGGCGCGAGUUA--GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 8389 | 0.75 | 0.107708 |
Target: 5'- -cCuCGCGCUGGCUGCGUagcCAGUCGGc -3' miRNA: 3'- caGcGCGCGACCGGCGCGa--GUUAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 39696 | 0.75 | 0.107708 |
Target: 5'- --aGCaGCGCcgGGCCGCGCUCAAgcgucCGGc -3' miRNA: 3'- cagCG-CGCGa-CCGGCGCGAGUUa----GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 18563 | 0.74 | 0.120381 |
Target: 5'- cGUCG-GUGgaGGCCGCGCUCg--CGGu -3' miRNA: 3'- -CAGCgCGCgaCCGGCGCGAGuuaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 6638 | 0.74 | 0.123759 |
Target: 5'- uUCGCGCGCuUGGCCggaguguccGCGCUCA--UGGu -3' miRNA: 3'- cAGCGCGCG-ACCGG---------CGCGAGUuaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 8225 | 0.74 | 0.127225 |
Target: 5'- uUCGUGCGC-GGCCGUGCcCucGUCGGc -3' miRNA: 3'- cAGCGCGCGaCCGGCGCGaGu-UAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 13624 | 0.73 | 0.138169 |
Target: 5'- --gGCGCGCUGGCUGCuCaaGAUCGGc -3' miRNA: 3'- cagCGCGCGACCGGCGcGagUUAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 27416 | 0.73 | 0.149971 |
Target: 5'- cGUCGCGCGcCUGGCgcacCGCGCcCGG-CGGc -3' miRNA: 3'- -CAGCGCGC-GACCG----GCGCGaGUUaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 10478 | 0.73 | 0.152439 |
Target: 5'- aGUCGCGCaGCaccggcccgaacgGGCCGUGCUCuuGAUCGa -3' miRNA: 3'- -CAGCGCG-CGa------------CCGGCGCGAG--UUAGCc -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 11089 | 0.72 | 0.175413 |
Target: 5'- gGUCGCGCGCgagcaccuugucGGCUGCGgC-CAAUUGGu -3' miRNA: 3'- -CAGCGCGCGa-----------CCGGCGC-GaGUUAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 33060 | 0.72 | 0.176356 |
Target: 5'- uGUCGUGCGCUucaucgGGUCGCGCagCGAcgCGGc -3' miRNA: 3'- -CAGCGCGCGA------CCGGCGCGa-GUUa-GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 32646 | 0.72 | 0.181136 |
Target: 5'- -gUGCGCGacCUGGCCGCGUggaaCGAUCuGGa -3' miRNA: 3'- caGCGCGC--GACCGGCGCGa---GUUAG-CC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 29625 | 0.72 | 0.181136 |
Target: 5'- -cCGgGCGCuugUGGCCGgGCUUGAUgGGg -3' miRNA: 3'- caGCgCGCG---ACCGGCgCGAGUUAgCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 20753 | 0.72 | 0.181136 |
Target: 5'- -cCGUagagGCGCUGcGCCGCGCUCGAcucaUCGc -3' miRNA: 3'- caGCG----CGCGAC-CGGCGCGAGUU----AGCc -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 19903 | 0.72 | 0.186031 |
Target: 5'- -gCGCGCGCU-GCgCGUGCUCGcugCGGg -3' miRNA: 3'- caGCGCGCGAcCG-GCGCGAGUua-GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 12902 | 0.71 | 0.191041 |
Target: 5'- cGUCGCcuuuggcgauGCGCUcGGCCGCGCccauaacgcuagUCAGcuucUCGGg -3' miRNA: 3'- -CAGCG----------CGCGA-CCGGCGCG------------AGUU----AGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 30264 | 0.71 | 0.191041 |
Target: 5'- --aGCuGCGCUGGUCGCGCgagUCGccggaaaacGUCGGg -3' miRNA: 3'- cagCG-CGCGACCGGCGCG---AGU---------UAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 7535 | 0.71 | 0.19617 |
Target: 5'- -cCGUGCGCUcGGCggCGUGCUCGAUCc- -3' miRNA: 3'- caGCGCGCGA-CCG--GCGCGAGUUAGcc -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 36330 | 0.71 | 0.20679 |
Target: 5'- cGUUGCgacauGCGCaaGGCCGCGCUCGA-CGa -3' miRNA: 3'- -CAGCG-----CGCGa-CCGGCGCGAGUUaGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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