Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26622 | 5' | -59.5 | NC_005357.1 | + | 12902 | 0.71 | 0.191041 |
Target: 5'- cGUCGCcuuuggcgauGCGCUcGGCCGCGCccauaacgcuagUCAGcuucUCGGg -3' miRNA: 3'- -CAGCG----------CGCGA-CCGGCGCG------------AGUU----AGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 13582 | 0.67 | 0.393241 |
Target: 5'- -aCGCGCGCUcGCCauCGCUCAccUGGa -3' miRNA: 3'- caGCGCGCGAcCGGc-GCGAGUuaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 13624 | 0.73 | 0.138169 |
Target: 5'- --gGCGCGCUGGCUGCuCaaGAUCGGc -3' miRNA: 3'- cagCGCGCGACCGGCGcGagUUAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 14973 | 0.69 | 0.274348 |
Target: 5'- --gGCGCGCUGGCauaccaGCGC-CAGggccugCGGc -3' miRNA: 3'- cagCGCGCGACCGg-----CGCGaGUUa-----GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 16812 | 0.69 | 0.281296 |
Target: 5'- gGUCGCGCcCaGGCgGCGCaguUCAcgCGGc -3' miRNA: 3'- -CAGCGCGcGaCCGgCGCG---AGUuaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 17989 | 0.67 | 0.3493 |
Target: 5'- uGUCGC-CGa-GGCCGCGCgcggCAccgacaaAUCGGg -3' miRNA: 3'- -CAGCGcGCgaCCGGCGCGa---GU-------UAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 18280 | 0.66 | 0.402268 |
Target: 5'- cGUCGagGCGCUgGGCCagGCGCgCAGcCGGc -3' miRNA: 3'- -CAGCg-CGCGA-CCGG--CGCGaGUUaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 18563 | 0.74 | 0.120381 |
Target: 5'- cGUCG-GUGgaGGCCGCGCUCg--CGGu -3' miRNA: 3'- -CAGCgCGCgaCCGGCGCGAGuuaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 19590 | 0.69 | 0.288383 |
Target: 5'- -gCGCGCGCUgucggcugucGGCaGCGCggcgaAGUCGGg -3' miRNA: 3'- caGCGCGCGA----------CCGgCGCGag---UUAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 19887 | 0.67 | 0.384347 |
Target: 5'- cGUCGCGCGCcuucuUGGCCGUGg-CAAg--- -3' miRNA: 3'- -CAGCGCGCG-----ACCGGCGCgaGUUagcc -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 19903 | 0.72 | 0.186031 |
Target: 5'- -gCGCGCGCU-GCgCGUGCUCGcugCGGg -3' miRNA: 3'- caGCGCGCGAcCG-GCGCGAGUua-GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 20628 | 0.67 | 0.387889 |
Target: 5'- gGUCG-GUGUcGGCCuGCGCUCGuuccuguccccgaauAUCGGu -3' miRNA: 3'- -CAGCgCGCGaCCGG-CGCGAGU---------------UAGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 20753 | 0.72 | 0.181136 |
Target: 5'- -cCGUagagGCGCUGcGCCGCGCUCGAcucaUCGc -3' miRNA: 3'- caGCG----CGCGAC-CGGCGCGAGUU----AGCc -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 21259 | 0.7 | 0.23492 |
Target: 5'- -cCGCGCaGCaGGCCGCGCUguugaacCAGggcgCGGa -3' miRNA: 3'- caGCGCG-CGaCCGGCGCGA-------GUUa---GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 21388 | 0.67 | 0.384347 |
Target: 5'- aUgGCGCGCUgGGCCuGCGCgagCA--UGGa -3' miRNA: 3'- cAgCGCGCGA-CCGG-CGCGa--GUuaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 22057 | 0.68 | 0.302976 |
Target: 5'- cGUCGCGCuuGCUcgGGUCGCGgUCGGcgcgCGGc -3' miRNA: 3'- -CAGCGCG--CGA--CCGGCGCgAGUUa---GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 22856 | 0.66 | 0.402268 |
Target: 5'- -gCGCGCGCUgcgaauugGGCUGCuucugGUUCGcgCGGu -3' miRNA: 3'- caGCGCGCGA--------CCGGCG-----CGAGUuaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 24146 | 0.7 | 0.235526 |
Target: 5'- -cUGCGCGcCUGGCCcaGCGcCUCGA-CGGc -3' miRNA: 3'- caGCGCGC-GACCGG--CGC-GAGUUaGCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 25301 | 0.68 | 0.325919 |
Target: 5'- gGUCGUGCgGCcGGCCcugccaccgGCGCUCGucgcCGGg -3' miRNA: 3'- -CAGCGCG-CGaCCGG---------CGCGAGUua--GCC- -5' |
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26622 | 5' | -59.5 | NC_005357.1 | + | 25794 | 0.68 | 0.341917 |
Target: 5'- -aUGCGCGC-GG-CGCGCUCGguAUCGu -3' miRNA: 3'- caGCGCGCGaCCgGCGCGAGU--UAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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