Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26623 | 5' | -57.5 | NC_005357.1 | + | 21089 | 0.66 | 0.522663 |
Target: 5'- cGuUGGCaaccuGGGcGcgGugGCCGGCAUc- -3' miRNA: 3'- aCuACCG-----CCC-CuaCugCGGCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 30584 | 0.66 | 0.522663 |
Target: 5'- aGAUGGUGGGcugggauacgucGGUGGCaUCGGCGaUCu -3' miRNA: 3'- aCUACCGCCC------------CUACUGcGGCCGUaAG- -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 36887 | 0.66 | 0.513094 |
Target: 5'- -cGUGGCGGGcGAccugggcggaaccugGGCgGCCGGCGUg- -3' miRNA: 3'- acUACCGCCC-CUa--------------CUG-CGGCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 8164 | 0.66 | 0.512035 |
Target: 5'- cGAUGauGCGGcccaGGAaGGCGCUGGCGUc- -3' miRNA: 3'- aCUAC--CGCC----CCUaCUGCGGCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 18340 | 0.66 | 0.501498 |
Target: 5'- uUGGUgGGCauaGGGAUGACcaccuguuuGCCGGCGg-- -3' miRNA: 3'- -ACUA-CCGc--CCCUACUG---------CGGCCGUaag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 7624 | 0.66 | 0.501498 |
Target: 5'- gUGAUGGUcaGGGGgcGcggcucgacccACGCCGGCu--- -3' miRNA: 3'- -ACUACCG--CCCCuaC-----------UGCGGCCGuaag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 17127 | 0.66 | 0.470487 |
Target: 5'- cGGUGGCaGGGccGGcCGCacgaccucaaGGCAUUCg -3' miRNA: 3'- aCUACCGcCCCuaCU-GCGg---------CCGUAAG- -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 29327 | 0.66 | 0.470487 |
Target: 5'- ---aGGCGGuGGcgGuCGCCGGCcaagUCc -3' miRNA: 3'- acuaCCGCC-CCuaCuGCGGCCGua--AG- -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 4246 | 0.66 | 0.470487 |
Target: 5'- aGAUGGCGuagucGGUGccggccgucaGCGCCGGCAUg- -3' miRNA: 3'- aCUACCGCcc---CUAC----------UGCGGCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 5437 | 0.67 | 0.450364 |
Target: 5'- gGAUGGCGGcguGGgcGAgGUCGGUAUc- -3' miRNA: 3'- aCUACCGCC---CCuaCUgCGGCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 10093 | 0.67 | 0.440482 |
Target: 5'- cGAccugGGCGGcGGuugucggGACGCCGGCc--- -3' miRNA: 3'- aCUa---CCGCC-CCua-----CUGCGGCCGuaag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 15141 | 0.67 | 0.430724 |
Target: 5'- aUGcUGGCGGcGGAUG-CGCCcagGGCGa-- -3' miRNA: 3'- -ACuACCGCC-CCUACuGCGG---CCGUaag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 18667 | 0.67 | 0.421094 |
Target: 5'- ---cGGCGcaucGGcccGGUGGCGCCGGCAUg- -3' miRNA: 3'- acuaCCGC----CC---CUACUGCGGCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 19924 | 0.68 | 0.374961 |
Target: 5'- ----uGCGGGGAUGAUGgCgGGCAUg- -3' miRNA: 3'- acuacCGCCCCUACUGC-GgCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 8638 | 0.69 | 0.348971 |
Target: 5'- cGGUGGCGaGGu---CGCCGGCcUUCa -3' miRNA: 3'- aCUACCGCcCCuacuGCGGCCGuAAG- -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 34644 | 0.69 | 0.332371 |
Target: 5'- ---gGGCGGcgaaGGGUgGACGCCGGCGc-- -3' miRNA: 3'- acuaCCGCC----CCUA-CUGCGGCCGUaag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 15917 | 0.7 | 0.300934 |
Target: 5'- -cGUGGCGGuGaAUGAUGCCGGCuugCg -3' miRNA: 3'- acUACCGCC-CcUACUGCGGCCGuaaG- -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 8601 | 0.71 | 0.251539 |
Target: 5'- cGAccGUGGGGAUGGCGuaGGCGUg- -3' miRNA: 3'- aCUacCGCCCCUACUGCggCCGUAag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 10125 | 0.72 | 0.232501 |
Target: 5'- uUGAUGGCGGcGAUGAgGUCGcGCAa-- -3' miRNA: 3'- -ACUACCGCCcCUACUgCGGC-CGUaag -5' |
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26623 | 5' | -57.5 | NC_005357.1 | + | 23579 | 0.72 | 0.203478 |
Target: 5'- gUGcgGGCGGGGGgcGACGauGGCcgUCa -3' miRNA: 3'- -ACuaCCGCCCCUa-CUGCggCCGuaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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