miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 5' -57.5 NC_005357.1 + 21089 0.66 0.522663
Target:  5'- cGuUGGCaaccuGGGcGcgGugGCCGGCAUc- -3'
miRNA:   3'- aCuACCG-----CCC-CuaCugCGGCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 30584 0.66 0.522663
Target:  5'- aGAUGGUGGGcugggauacgucGGUGGCaUCGGCGaUCu -3'
miRNA:   3'- aCUACCGCCC------------CUACUGcGGCCGUaAG- -5'
26623 5' -57.5 NC_005357.1 + 36887 0.66 0.513094
Target:  5'- -cGUGGCGGGcGAccugggcggaaccugGGCgGCCGGCGUg- -3'
miRNA:   3'- acUACCGCCC-CUa--------------CUG-CGGCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 8164 0.66 0.512035
Target:  5'- cGAUGauGCGGcccaGGAaGGCGCUGGCGUc- -3'
miRNA:   3'- aCUAC--CGCC----CCUaCUGCGGCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 18340 0.66 0.501498
Target:  5'- uUGGUgGGCauaGGGAUGACcaccuguuuGCCGGCGg-- -3'
miRNA:   3'- -ACUA-CCGc--CCCUACUG---------CGGCCGUaag -5'
26623 5' -57.5 NC_005357.1 + 7624 0.66 0.501498
Target:  5'- gUGAUGGUcaGGGGgcGcggcucgacccACGCCGGCu--- -3'
miRNA:   3'- -ACUACCG--CCCCuaC-----------UGCGGCCGuaag -5'
26623 5' -57.5 NC_005357.1 + 17127 0.66 0.470487
Target:  5'- cGGUGGCaGGGccGGcCGCacgaccucaaGGCAUUCg -3'
miRNA:   3'- aCUACCGcCCCuaCU-GCGg---------CCGUAAG- -5'
26623 5' -57.5 NC_005357.1 + 29327 0.66 0.470487
Target:  5'- ---aGGCGGuGGcgGuCGCCGGCcaagUCc -3'
miRNA:   3'- acuaCCGCC-CCuaCuGCGGCCGua--AG- -5'
26623 5' -57.5 NC_005357.1 + 4246 0.66 0.470487
Target:  5'- aGAUGGCGuagucGGUGccggccgucaGCGCCGGCAUg- -3'
miRNA:   3'- aCUACCGCcc---CUAC----------UGCGGCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 5437 0.67 0.450364
Target:  5'- gGAUGGCGGcguGGgcGAgGUCGGUAUc- -3'
miRNA:   3'- aCUACCGCC---CCuaCUgCGGCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 10093 0.67 0.440482
Target:  5'- cGAccugGGCGGcGGuugucggGACGCCGGCc--- -3'
miRNA:   3'- aCUa---CCGCC-CCua-----CUGCGGCCGuaag -5'
26623 5' -57.5 NC_005357.1 + 15141 0.67 0.430724
Target:  5'- aUGcUGGCGGcGGAUG-CGCCcagGGCGa-- -3'
miRNA:   3'- -ACuACCGCC-CCUACuGCGG---CCGUaag -5'
26623 5' -57.5 NC_005357.1 + 18667 0.67 0.421094
Target:  5'- ---cGGCGcaucGGcccGGUGGCGCCGGCAUg- -3'
miRNA:   3'- acuaCCGC----CC---CUACUGCGGCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 19924 0.68 0.374961
Target:  5'- ----uGCGGGGAUGAUGgCgGGCAUg- -3'
miRNA:   3'- acuacCGCCCCUACUGC-GgCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 8638 0.69 0.348971
Target:  5'- cGGUGGCGaGGu---CGCCGGCcUUCa -3'
miRNA:   3'- aCUACCGCcCCuacuGCGGCCGuAAG- -5'
26623 5' -57.5 NC_005357.1 + 34644 0.69 0.332371
Target:  5'- ---gGGCGGcgaaGGGUgGACGCCGGCGc-- -3'
miRNA:   3'- acuaCCGCC----CCUA-CUGCGGCCGUaag -5'
26623 5' -57.5 NC_005357.1 + 15917 0.7 0.300934
Target:  5'- -cGUGGCGGuGaAUGAUGCCGGCuugCg -3'
miRNA:   3'- acUACCGCC-CcUACUGCGGCCGuaaG- -5'
26623 5' -57.5 NC_005357.1 + 8601 0.71 0.251539
Target:  5'- cGAccGUGGGGAUGGCGuaGGCGUg- -3'
miRNA:   3'- aCUacCGCCCCUACUGCggCCGUAag -5'
26623 5' -57.5 NC_005357.1 + 10125 0.72 0.232501
Target:  5'- uUGAUGGCGGcGAUGAgGUCGcGCAa-- -3'
miRNA:   3'- -ACUACCGCCcCUACUgCGGC-CGUaag -5'
26623 5' -57.5 NC_005357.1 + 23579 0.72 0.203478
Target:  5'- gUGcgGGCGGGGGgcGACGauGGCcgUCa -3'
miRNA:   3'- -ACuaCCGCCCCUa-CUGCggCCGuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.