miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2663 3' -55.5 NC_001491.2 + 57905 0.66 0.905416
Target:  5'- cGCUUcgguuGCCCCGGGCacGCuAGUCGGuGCg -3'
miRNA:   3'- -UGAGu----UGGGGUCCGauCG-UCAGUC-UG- -5'
2663 3' -55.5 NC_001491.2 + 24281 0.66 0.892265
Target:  5'- -aUCAGCCCUaucaccucuGGGUgcugggGGCAG-CAGACu -3'
miRNA:   3'- ugAGUUGGGG---------UCCGa-----UCGUCaGUCUG- -5'
2663 3' -55.5 NC_001491.2 + 90245 0.66 0.885331
Target:  5'- uGCUUc-CCCCuGGUUAGCGGUUAcGCa -3'
miRNA:   3'- -UGAGuuGGGGuCCGAUCGUCAGUcUG- -5'
2663 3' -55.5 NC_001491.2 + 136305 0.66 0.878164
Target:  5'- gGCUggCGGCCUUGGGCggUGGCAGcgcCAGACg -3'
miRNA:   3'- -UGA--GUUGGGGUCCG--AUCGUCa--GUCUG- -5'
2663 3' -55.5 NC_001491.2 + 148923 0.67 0.870768
Target:  5'- gGCUgGGCCCCAcGCUGGCuG-CGGGg -3'
miRNA:   3'- -UGAgUUGGGGUcCGAUCGuCaGUCUg -5'
2663 3' -55.5 NC_001491.2 + 32745 0.67 0.830574
Target:  5'- aACUC-AUCCCAGGCUaccggggcggcGGCAG-CAGcaGCa -3'
miRNA:   3'- -UGAGuUGGGGUCCGA-----------UCGUCaGUC--UG- -5'
2663 3' -55.5 NC_001491.2 + 48635 0.68 0.804144
Target:  5'- gACUCGACCaCGGGCaAGCGGggAGAg -3'
miRNA:   3'- -UGAGUUGGgGUCCGaUCGUCagUCUg -5'
2663 3' -55.5 NC_001491.2 + 3979 0.68 0.794997
Target:  5'- gGCUCAugGCCaCCAGGCggccgcgugUGGCAGggccCAGAg -3'
miRNA:   3'- -UGAGU--UGG-GGUCCG---------AUCGUCa---GUCUg -5'
2663 3' -55.5 NC_001491.2 + 3420 0.69 0.756975
Target:  5'- aGCUCGucggAgCCCAGGCggugGGUagGGUCAGAg -3'
miRNA:   3'- -UGAGU----UgGGGUCCGa---UCG--UCAGUCUg -5'
2663 3' -55.5 NC_001491.2 + 84458 0.7 0.696693
Target:  5'- cGCUCAccGCgCCCAGGCgagcGCAGagcCGGGCg -3'
miRNA:   3'- -UGAGU--UG-GGGUCCGau--CGUCa--GUCUG- -5'
2663 3' -55.5 NC_001491.2 + 84876 1.1 0.002244
Target:  5'- cACUCAACCCCAGGCUAGCAGUCAGACg -3'
miRNA:   3'- -UGAGUUGGGGUCCGAUCGUCAGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.