miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 3' -68.1 NC_005808.1 + 24302 0.71 0.070332
Target:  5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3'
miRNA:   3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 24575 0.69 0.096841
Target:  5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3'
miRNA:   3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5'
26631 3' -68.1 NC_005808.1 + 24641 0.67 0.139642
Target:  5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3'
miRNA:   3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 25308 0.66 0.158754
Target:  5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3'
miRNA:   3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 25507 0.68 0.116116
Target:  5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3'
miRNA:   3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 25693 0.66 0.150841
Target:  5'- aGGUGGacgcgcugCUGGCgaccGCGCCGCCGUGGu -3'
miRNA:   3'- cCCGCCg-------GGCCGgc--CGCGGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 25801 0.67 0.127212
Target:  5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3'
miRNA:   3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5'
26631 3' -68.1 NC_005808.1 + 25879 0.69 0.092824
Target:  5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5'
26631 3' -68.1 NC_005808.1 + 27406 0.69 0.102904
Target:  5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3'
miRNA:   3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 27441 0.67 0.139282
Target:  5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3'
miRNA:   3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 27503 0.72 0.053709
Target:  5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3'
miRNA:   3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 27692 0.66 0.171327
Target:  5'- uGGaauacaGGCCgCGcGCCGGCagcggcucGCCGCCGg-- -3'
miRNA:   3'- cCCg-----CCGG-GC-CGGCCG--------CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 27770 0.67 0.143287
Target:  5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3'
miRNA:   3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5'
26631 3' -68.1 NC_005808.1 + 27839 0.75 0.031139
Target:  5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 27901 0.77 0.020059
Target:  5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3'
miRNA:   3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5'
26631 3' -68.1 NC_005808.1 + 28672 0.66 0.158754
Target:  5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5'
26631 3' -68.1 NC_005808.1 + 29088 0.66 0.16704
Target:  5'- cGGGCgccgaggucaGGCCCGuGCgGGacuuGCUGCCGg-- -3'
miRNA:   3'- -CCCG----------CCGGGC-CGgCCg---CGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 29403 0.66 0.154752
Target:  5'- uGGUucgaGGaCuuGGCCGGCGaCCGCCa--- -3'
miRNA:   3'- cCCG----CC-GggCCGGCCGC-GGCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 31048 0.67 0.128875
Target:  5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3'
miRNA:   3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 31316 0.67 0.12921
Target:  5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3'
miRNA:   3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.