miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 5' -56.6 NC_005808.1 + 717 1.1 0.000425
Target:  5'- uGGCUACAGCCUUGGGCACCGACUCGAc -3'
miRNA:   3'- -CCGAUGUCGGAACCCGUGGCUGAGCU- -5'
26631 5' -56.6 NC_005808.1 + 13452 0.77 0.114009
Target:  5'- aGCUugGCGGCCUcGGGCGCgGugUCGGg -3'
miRNA:   3'- cCGA--UGUCGGAaCCCGUGgCugAGCU- -5'
26631 5' -56.6 NC_005808.1 + 27313 0.77 0.120666
Target:  5'- cGGCcaAgAGCCUgGGGCGCCGGCUgGAc -3'
miRNA:   3'- -CCGa-UgUCGGAaCCCGUGGCUGAgCU- -5'
26631 5' -56.6 NC_005808.1 + 35516 0.75 0.157038
Target:  5'- cGGCUGCGGCCUggaugaccagggccGGGCGCUugucgGAUUCGGg -3'
miRNA:   3'- -CCGAUGUCGGAa-------------CCCGUGG-----CUGAGCU- -5'
26631 5' -56.6 NC_005808.1 + 1026 0.74 0.183177
Target:  5'- uGGCUGCAagcuGCCgUGGGCACCGcGCagGAc -3'
miRNA:   3'- -CCGAUGU----CGGaACCCGUGGC-UGagCU- -5'
26631 5' -56.6 NC_005808.1 + 26886 0.71 0.301813
Target:  5'- aGGCUgacgGCAGugugaCCUUGGGCAUCGACg--- -3'
miRNA:   3'- -CCGA----UGUC-----GGAACCCGUGGCUGagcu -5'
26631 5' -56.6 NC_005808.1 + 35216 0.7 0.34155
Target:  5'- cGGCUuCGGCCUucgcgcgaaUGGccuuGCACCagGACUCGAc -3'
miRNA:   3'- -CCGAuGUCGGA---------ACC----CGUGG--CUGAGCU- -5'
26631 5' -56.6 NC_005808.1 + 4320 0.7 0.34155
Target:  5'- cGGCgcugACGGCC---GGCACCGACUaCGc -3'
miRNA:   3'- -CCGa---UGUCGGaacCCGUGGCUGA-GCu -5'
26631 5' -56.6 NC_005808.1 + 28049 0.69 0.384029
Target:  5'- cGGCUACAGCCUgaUGGcccagccCACCGaggacguGCUCGc -3'
miRNA:   3'- -CCGAUGUCGGA--ACCc------GUGGC-------UGAGCu -5'
26631 5' -56.6 NC_005808.1 + 32731 0.69 0.384932
Target:  5'- gGGCUucacgucggGCAGCUUcGcGGCGCCGAacUUCGAc -3'
miRNA:   3'- -CCGA---------UGUCGGAaC-CCGUGGCU--GAGCU- -5'
26631 5' -56.6 NC_005808.1 + 20229 0.69 0.403277
Target:  5'- cGGCUguuGGCCUUGGGUGCCuuGCUCc- -3'
miRNA:   3'- -CCGAug-UCGGAACCCGUGGc-UGAGcu -5'
26631 5' -56.6 NC_005808.1 + 1353 0.69 0.412654
Target:  5'- uGGUcgGCGGCCUUGcGCAuCCGGCgacCGAa -3'
miRNA:   3'- -CCGa-UGUCGGAACcCGU-GGCUGa--GCU- -5'
26631 5' -56.6 NC_005808.1 + 29114 0.67 0.481854
Target:  5'- uGGcCUACgAGCCgccggUGGGUAUCGACcuggcCGAa -3'
miRNA:   3'- -CC-GAUG-UCGGa----ACCCGUGGCUGa----GCU- -5'
26631 5' -56.6 NC_005808.1 + 14416 0.67 0.492201
Target:  5'- gGGCgucgccagGCGcGCCUgcGGCACCGugUUGGg -3'
miRNA:   3'- -CCGa-------UGU-CGGAacCCGUGGCugAGCU- -5'
26631 5' -56.6 NC_005808.1 + 32586 0.67 0.492201
Target:  5'- cGGCaucacCAGCCUgcacGGGCGCgGAguuCUCGGc -3'
miRNA:   3'- -CCGau---GUCGGAa---CCCGUGgCU---GAGCU- -5'
26631 5' -56.6 NC_005808.1 + 13637 0.67 0.50265
Target:  5'- uGGCgagcGCGcguucaacaucGCCgUGGGCACCGAgUCa- -3'
miRNA:   3'- -CCGa---UGU-----------CGGaACCCGUGGCUgAGcu -5'
26631 5' -56.6 NC_005808.1 + 2526 0.67 0.513194
Target:  5'- uGCaGCAcGCCUUGugcaacaucguGGCGCCGAUcuUCGAg -3'
miRNA:   3'- cCGaUGU-CGGAAC-----------CCGUGGCUG--AGCU- -5'
26631 5' -56.6 NC_005808.1 + 20534 0.66 0.533469
Target:  5'- uGGCUAUGGCCUUcgccgaaGGGaACCGGaaCGAg -3'
miRNA:   3'- -CCGAUGUCGGAA-------CCCgUGGCUgaGCU- -5'
26631 5' -56.6 NC_005808.1 + 32173 0.66 0.533469
Target:  5'- cGGCaGCGGCCa-GGGCguugagcaacgcgGCCGugUUGGc -3'
miRNA:   3'- -CCGaUGUCGGaaCCCG-------------UGGCugAGCU- -5'
26631 5' -56.6 NC_005808.1 + 10744 0.66 0.534545
Target:  5'- uGCUGCucGCCaaGGGCGC--GCUCGAc -3'
miRNA:   3'- cCGAUGu-CGGaaCCCGUGgcUGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.