Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26632 | 5' | -58.2 | NC_005808.1 | + | 21662 | 0.69 | 0.312302 |
Target: 5'- -gGCACCAAUCcGCagaugaccgCCACCgaagUGGCCGAg -3' miRNA: 3'- gaUGUGGUUGGaCG---------GGUGG----ACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 40798 | 0.69 | 0.312302 |
Target: 5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3' miRNA: 3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 34993 | 0.69 | 0.320117 |
Target: 5'- gCUGCGCgaccaCGugCUGUCCACCgucGCCGAc -3' miRNA: 3'- -GAUGUG-----GUugGACGGGUGGac-CGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 20044 | 0.69 | 0.327276 |
Target: 5'- uCUACGCggacaucggCGGCCUGCCCgaaaccuggguuGCCUcguccacGGCCGAc -3' miRNA: 3'- -GAUGUG---------GUUGGACGGG------------UGGA-------CCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 9496 | 0.69 | 0.328078 |
Target: 5'- -cAUGCCAGCCUGuUCCGCCgUGG-CGAa -3' miRNA: 3'- gaUGUGGUUGGAC-GGGUGG-ACCgGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 38410 | 0.69 | 0.328078 |
Target: 5'- -cGCgGCCAACaUGCCCGCCaucgaggcGGCCGGc -3' miRNA: 3'- gaUG-UGGUUGgACGGGUGGa-------CCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 15107 | 0.68 | 0.336184 |
Target: 5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3' miRNA: 3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 10975 | 0.68 | 0.344436 |
Target: 5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3' miRNA: 3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 536 | 0.68 | 0.344436 |
Target: 5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3' miRNA: 3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 12180 | 0.68 | 0.352832 |
Target: 5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3' miRNA: 3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 6302 | 0.68 | 0.352832 |
Target: 5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3' miRNA: 3'- gauGUGGUUGgACGggu-GGACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 39914 | 0.68 | 0.360512 |
Target: 5'- aCUACGa-AACCUGCCguggcugaucgaaCACCUGGgCGAc -3' miRNA: 3'- -GAUGUggUUGGACGG-------------GUGGACCgGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 16887 | 0.68 | 0.361372 |
Target: 5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3' miRNA: 3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 9962 | 0.68 | 0.370055 |
Target: 5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3' miRNA: 3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 3582 | 0.68 | 0.370055 |
Target: 5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3' miRNA: 3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 37603 | 0.68 | 0.377991 |
Target: 5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3' miRNA: 3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 9617 | 0.68 | 0.378879 |
Target: 5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3' miRNA: 3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 4975 | 0.67 | 0.387844 |
Target: 5'- -cGCuGCCGACgUuUCCACCgUGGCCGAa -3' miRNA: 3'- gaUG-UGGUUGgAcGGGUGG-ACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 13290 | 0.67 | 0.396946 |
Target: 5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3' miRNA: 3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 18473 | 0.67 | 0.396947 |
Target: 5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3' miRNA: 3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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