miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 3' -54 NC_005808.1 + 247 0.69 0.550945
Target:  5'- aGCgUGACGGUgcccagcgACACCGGGgCGcauccgccUGCGg -3'
miRNA:   3'- -CG-AUUGCCAa-------UGUGGCCCgGCu-------ACGC- -5'
26633 3' -54 NC_005808.1 + 1192 1.1 0.000859
Target:  5'- aGCUAACGGUUACACCGGGCCGAUGCGc -3'
miRNA:   3'- -CGAUUGCCAAUGUGGCCCGGCUACGC- -5'
26633 3' -54 NC_005808.1 + 3240 0.66 0.728736
Target:  5'- cGC-AGCGG--ACGCCGGGCUugccAUGCu -3'
miRNA:   3'- -CGaUUGCCaaUGUGGCCCGGc---UACGc -5'
26633 3' -54 NC_005808.1 + 5388 0.68 0.628906
Target:  5'- uGCUGACGGUgcuCACgucGCCGAUGUu -3'
miRNA:   3'- -CGAUUGCCAau-GUGgccCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 6469 0.69 0.540007
Target:  5'- --cAugGGccgcgacUACACCGGGCCGGccggccUGCGc -3'
miRNA:   3'- cgaUugCCa------AUGUGGCCCGGCU------ACGC- -5'
26633 3' -54 NC_005808.1 + 6663 0.67 0.684856
Target:  5'- cGCUcAUGGUcUGCGCCacGCCGAUGUu -3'
miRNA:   3'- -CGAuUGCCA-AUGUGGccCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 6718 0.71 0.455733
Target:  5'- ---cACGGUgaaaagccgcUGCGCUGGGCCGccGCGc -3'
miRNA:   3'- cgauUGCCA----------AUGUGGCCCGGCuaCGC- -5'
26633 3' -54 NC_005808.1 + 7846 0.68 0.60647
Target:  5'- gGCgAAgGGUggACGCCGGcgcagaucgcGCCGGUGCu -3'
miRNA:   3'- -CGaUUgCCAa-UGUGGCC----------CGGCUACGc -5'
26633 3' -54 NC_005808.1 + 8604 0.68 0.60647
Target:  5'- uGCUGGauaagcUGGUUGCGCUucucGGCCGcUGCGg -3'
miRNA:   3'- -CGAUU------GCCAAUGUGGc---CCGGCuACGC- -5'
26633 3' -54 NC_005808.1 + 9341 0.69 0.529144
Target:  5'- cGCagcCGGUgu-ACCGGGCCGAccgcuuccUGCGg -3'
miRNA:   3'- -CGauuGCCAaugUGGCCCGGCU--------ACGC- -5'
26633 3' -54 NC_005808.1 + 10552 0.66 0.750121
Target:  5'- aGC--ACGGcccguUCGGGCCGGUGCu -3'
miRNA:   3'- -CGauUGCCaauguGGCCCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 15142 0.67 0.684856
Target:  5'- uGCUGGCGGcggaUGCGCCcagggcgacGGCUGAUGUu -3'
miRNA:   3'- -CGAUUGCCa---AUGUGGc--------CCGGCUACGc -5'
26633 3' -54 NC_005808.1 + 15590 0.67 0.63901
Target:  5'- cGCU-GCGGaUGCACCGcgccaucGGCCagGAUGCu -3'
miRNA:   3'- -CGAuUGCCaAUGUGGC-------CCGG--CUACGc -5'
26633 3' -54 NC_005808.1 + 19204 0.67 0.673725
Target:  5'- gGCUGACGGUgugg--GGGCCGAacacccUGCa -3'
miRNA:   3'- -CGAUUGCCAauguggCCCGGCU------ACGc -5'
26633 3' -54 NC_005808.1 + 23760 0.78 0.159748
Target:  5'- uGCcGGCGc---CACCGGGCCGAUGCGc -3'
miRNA:   3'- -CGaUUGCcaauGUGGCCCGGCUACGC- -5'
26633 3' -54 NC_005808.1 + 24493 0.68 0.60647
Target:  5'- cGCgcGCGGcaccgACAaaUCGGGCCGGcUGCGc -3'
miRNA:   3'- -CGauUGCCaa---UGU--GGCCCGGCU-ACGC- -5'
26633 3' -54 NC_005808.1 + 25147 0.67 0.695934
Target:  5'- cGCcgGGCGcGcUGCGCUGGGUggCGAUGCu -3'
miRNA:   3'- -CGa-UUGC-CaAUGUGGCCCG--GCUACGc -5'
26633 3' -54 NC_005808.1 + 25804 0.73 0.35263
Target:  5'- cGCgcuCGGUaucguugaucUGCACCGGGCCGccguugGCGc -3'
miRNA:   3'- -CGauuGCCA----------AUGUGGCCCGGCua----CGC- -5'
26633 3' -54 NC_005808.1 + 26524 0.66 0.739485
Target:  5'- aCUGACGG--AUGCCGaGGUCGA-GCGc -3'
miRNA:   3'- cGAUUGCCaaUGUGGC-CCGGCUaCGC- -5'
26633 3' -54 NC_005808.1 + 27497 0.74 0.311538
Target:  5'- gGCcuGCGGc--CGCCGGGCgCGGUGCGc -3'
miRNA:   3'- -CGauUGCCaauGUGGCCCG-GCUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.