miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 5' -55.1 NC_005808.1 + 207 0.67 0.570434
Target:  5'- cCGgGCGACACGGCgAAcuGGCGcaccUCgGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGgUU--CCGUu---AGaUG- -5'
26633 5' -55.1 NC_005808.1 + 1158 1.09 0.000707
Target:  5'- cCGCGCGACACGGCCAAGGCAAUCUACc -3'
miRNA:   3'- -GCGCGCUGUGCCGGUUCCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 1673 0.69 0.442771
Target:  5'- gCGCGUGAUGCuGCCGcgcAGGUAGUCg-- -3'
miRNA:   3'- -GCGCGCUGUGcCGGU---UCCGUUAGaug -5'
26633 5' -55.1 NC_005808.1 + 2205 0.66 0.626575
Target:  5'- aCG-GCGGCGCGGUUGAccGGCug-CUGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGGUU--CCGuuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 4087 0.71 0.34034
Target:  5'- cCGCGCGGCAugacgcuggUGGCCGgcgcguuuuGGGCGgacaucuAUCUGCu -3'
miRNA:   3'- -GCGCGCUGU---------GCCGGU---------UCCGU-------UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 4695 0.67 0.548284
Target:  5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3'
miRNA:   3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5'
26633 5' -55.1 NC_005808.1 + 6708 0.69 0.477462
Target:  5'- aGCGCgGACAcucCGGCCAAgcgcgcgaagcuggcGGCGGaCUACg -3'
miRNA:   3'- gCGCG-CUGU---GCCGGUU---------------CCGUUaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 7207 0.66 0.637858
Target:  5'- aGCGCGAugucCACGGCa---GC-AUCUGCg -3'
miRNA:   3'- gCGCGCU----GUGCCGguucCGuUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 7416 0.67 0.544984
Target:  5'- gGCGUGGCACGagugguugaucgacGCCAAccGGCug-CUGCg -3'
miRNA:   3'- gCGCGCUGUGC--------------CGGUU--CCGuuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 7664 0.67 0.548284
Target:  5'- uGC-CGuACACGcGCCGuucuuuggcGGCGAUCUGCg -3'
miRNA:   3'- gCGcGC-UGUGC-CGGUu--------CCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 8022 0.67 0.581593
Target:  5'- uGCGCGcCGaGGCCAcGGGCAAgCUGu -3'
miRNA:   3'- gCGCGCuGUgCCGGU-UCCGUUaGAUg -5'
26633 5' -55.1 NC_005808.1 + 8391 0.72 0.299377
Target:  5'- uCGCGCuGGCugcguagccaguCGGCCAGGGCcgugcgcuuGUCUACg -3'
miRNA:   3'- -GCGCG-CUGu-----------GCCGGUUCCGu--------UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 9334 0.66 0.615296
Target:  5'- gGCGCGGCG-GGCgGcGGCAuccuUUUGCa -3'
miRNA:   3'- gCGCGCUGUgCCGgUuCCGUu---AGAUG- -5'
26633 5' -55.1 NC_005808.1 + 9534 0.74 0.237856
Target:  5'- uGCuGCGGCccuguuCGGCCAGuGCGAUCUGCu -3'
miRNA:   3'- gCG-CGCUGu-----GCCGGUUcCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 9847 0.69 0.47331
Target:  5'- uGCGCGACcUGGCCGcguGGaaCGAUCUGg -3'
miRNA:   3'- gCGCGCUGuGCCGGUu--CC--GUUAGAUg -5'
26633 5' -55.1 NC_005808.1 + 10472 0.66 0.660398
Target:  5'- --aGUGGCGaGGCCAucGGCGcgCUGCa -3'
miRNA:   3'- gcgCGCUGUgCCGGUu-CCGUuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 10600 0.74 0.213574
Target:  5'- uGCGCGugGCGGCgGAaagcguggccGGCGGUCaGCa -3'
miRNA:   3'- gCGCGCugUGCCGgUU----------CCGUUAGaUG- -5'
26633 5' -55.1 NC_005808.1 + 10701 0.7 0.385213
Target:  5'- aGCGCG-CACGGCCucGGCcgaUUGCu -3'
miRNA:   3'- gCGCGCuGUGCCGGuuCCGuuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 10783 0.68 0.504873
Target:  5'- gGCGaCGACGCauucaagcaaucGGCCGAGGCcgugcgcgCUGCc -3'
miRNA:   3'- gCGC-GCUGUG------------CCGGUUCCGuua-----GAUG- -5'
26633 5' -55.1 NC_005808.1 + 11634 0.67 0.568209
Target:  5'- uGgGCGGCAUGGCUucgaugaccggcGGGCAGUcCUAUc -3'
miRNA:   3'- gCgCGCUGUGCCGGu-----------UCCGUUA-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.