Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26634 | 5' | -53.1 | NC_005808.1 | + | 32545 | 0.69 | 0.603539 |
Target: 5'- --gAUUCgGGCGcaUCGGCCGcCCCCa -3' miRNA: 3'- caaUAAGgUUGUugGGCCGGCuGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 30015 | 0.69 | 0.603539 |
Target: 5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3' miRNA: 3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 38509 | 0.69 | 0.592254 |
Target: 5'- -gUGUaCCGACAGCacgaucugguagCCGGCCG-CCUCg -3' miRNA: 3'- caAUAaGGUUGUUG------------GGCCGGCuGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 30415 | 0.69 | 0.592254 |
Target: 5'- --gGUUCUcgcgcGACGACaaGGCCaaaGACCCCg -3' miRNA: 3'- caaUAAGG-----UUGUUGggCCGG---CUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 11349 | 0.69 | 0.581005 |
Target: 5'- ---uUUCCGcCuACCUGGCCGAgcgUCCCa -3' miRNA: 3'- caauAAGGUuGuUGGGCCGGCU---GGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 38240 | 0.69 | 0.569801 |
Target: 5'- ----aUCCGccuGCcgUCCGGCCGAUUCCu -3' miRNA: 3'- caauaAGGU---UGuuGGGCCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 18136 | 0.7 | 0.558651 |
Target: 5'- ----cUUCGGCGGCCCaGCaCGcACCCCg -3' miRNA: 3'- caauaAGGUUGUUGGGcCG-GC-UGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 23497 | 0.7 | 0.525605 |
Target: 5'- ----aUCC-GCAuCCCGGCCGGCgUCg -3' miRNA: 3'- caauaAGGuUGUuGGGCCGGCUGgGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 35434 | 0.7 | 0.525605 |
Target: 5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3' miRNA: 3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 25072 | 0.7 | 0.525605 |
Target: 5'- ------aCGGCAACCCGcugucGUCGGCCCCc -3' miRNA: 3'- caauaagGUUGUUGGGC-----CGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 24642 | 0.7 | 0.525605 |
Target: 5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3' miRNA: 3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 41398 | 0.7 | 0.525605 |
Target: 5'- ----gUCCGGCGAgcgccgguauuCCCGGCCagcGACCCa -3' miRNA: 3'- caauaAGGUUGUU-----------GGGCCGG---CUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 19439 | 0.7 | 0.525605 |
Target: 5'- -----gUgGACAagGCCCuGGCCGACCUCa -3' miRNA: 3'- caauaaGgUUGU--UGGG-CCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 11853 | 0.7 | 0.514752 |
Target: 5'- -----cCCAACAAUCUGGUCGGCaCCa -3' miRNA: 3'- caauaaGGUUGUUGGGCCGGCUGgGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 37766 | 0.7 | 0.514752 |
Target: 5'- ---uUUCCGugAAUUCGacgacggcGCCGGCCCCg -3' miRNA: 3'- caauAAGGUugUUGGGC--------CGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 768 | 0.7 | 0.50399 |
Target: 5'- ----aUCCugGGCGguaucuugggcGCCCGGCCGGCgCCg -3' miRNA: 3'- caauaAGG--UUGU-----------UGGGCCGGCUGgGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 14599 | 0.7 | 0.50399 |
Target: 5'- uGUUGUccggcgCCGGCGACgUGGCUGAUUCCu -3' miRNA: 3'- -CAAUAa-----GGUUGUUGgGCCGGCUGGGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 27912 | 0.71 | 0.482768 |
Target: 5'- --cGUUCuugagCAGCGGCgCGGCCGGCgCCa -3' miRNA: 3'- caaUAAG-----GUUGUUGgGCCGGCUGgGG- -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 38503 | 0.71 | 0.472319 |
Target: 5'- ----aUUCAGCGccgcccACCUGGCCGGCCUg -3' miRNA: 3'- caauaAGGUUGU------UGGGCCGGCUGGGg -5' |
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26634 | 5' | -53.1 | NC_005808.1 | + | 15318 | 0.71 | 0.472319 |
Target: 5'- -cUGUUUguGCGGCa-GGCCGACCCUc -3' miRNA: 3'- caAUAAGguUGUUGggCCGGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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