Results 61 - 80 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 8908 | 0.68 | 0.143052 |
Target: 5'- -gGCCaaCGCGCUGGCCCGCGuuGCGGc -3' miRNA: 3'- agCGGccGUGCGGCCGGGUGC--CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 35413 | 0.68 | 0.131045 |
Target: 5'- gCGCgGGCcgauguCGCCGGCCUugugcagcuucucgGCGGUGGu -3' miRNA: 3'- aGCGgCCGu-----GCGGCCGGG--------------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 27701 | 0.67 | 0.163168 |
Target: 5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3' miRNA: 3'- agCGGcCGUGCGGCCGggUGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 4678 | 0.67 | 0.163168 |
Target: 5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3' miRNA: 3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 12285 | 0.67 | 0.158951 |
Target: 5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3' miRNA: 3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 42426 | 0.67 | 0.154833 |
Target: 5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3' miRNA: 3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18469 | 0.67 | 0.154833 |
Target: 5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3' miRNA: 3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 27422 | 0.67 | 0.150811 |
Target: 5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3' miRNA: 3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 41324 | 0.67 | 0.163168 |
Target: 5'- gUCGCUGGCcgggaauaccgGCGCUcGCCgGaCGGCGGAa -3' miRNA: 3'- -AGCGGCCG-----------UGCGGcCGGgU-GCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 22078 | 0.67 | 0.167485 |
Target: 5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3' miRNA: 3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24519 | 0.67 | 0.150415 |
Target: 5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3' miRNA: 3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 4876 | 0.67 | 0.154426 |
Target: 5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3' miRNA: 3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 36275 | 0.67 | 0.154833 |
Target: 5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3' miRNA: 3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 26318 | 0.67 | 0.154833 |
Target: 5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3' miRNA: 3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 35289 | 0.67 | 0.158951 |
Target: 5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3' miRNA: 3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 8178 | 0.67 | 0.150811 |
Target: 5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3' miRNA: 3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 24012 | 0.67 | 0.176427 |
Target: 5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3' miRNA: 3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 40716 | 0.67 | 0.171904 |
Target: 5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3' miRNA: 3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 23091 | 0.67 | 0.171904 |
Target: 5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3' miRNA: 3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 27808 | 0.67 | 0.170567 |
Target: 5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3' miRNA: 3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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