miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 38095 0.67 0.171904
Target:  5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3'
miRNA:   3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 41324 0.67 0.163168
Target:  5'- gUCGCUGGCcgggaauaccgGCGCUcGCCgGaCGGCGGAa -3'
miRNA:   3'- -AGCGGCCG-----------UGCGGcCGGgU-GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 25733 0.67 0.170124
Target:  5'- cCGCCGGCugaugacguacaugACGCCGGCagaacugCCGaGGUGGAc -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCCG-------GGUgCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 24012 0.67 0.176427
Target:  5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3'
miRNA:   3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 40716 0.67 0.171904
Target:  5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3'
miRNA:   3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5'
26635 3' -65.8 NC_005808.1 + 42426 0.67 0.154833
Target:  5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3'
miRNA:   3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 18469 0.67 0.154833
Target:  5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3'
miRNA:   3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5'
26635 3' -65.8 NC_005808.1 + 4678 0.67 0.163168
Target:  5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3'
miRNA:   3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 27701 0.67 0.163168
Target:  5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 27808 0.67 0.170567
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 23091 0.67 0.171904
Target:  5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3'
miRNA:   3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 12285 0.67 0.158951
Target:  5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 28639 0.66 0.205841
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 25684 0.66 0.190637
Target:  5'- -aGCCGGCggauuucggcaACGCUGcucauaccaGcCCCGCGGCGGGg -3'
miRNA:   3'- agCGGCCG-----------UGCGGC---------C-GGGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 33520 0.66 0.190637
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 33658 0.66 0.195091
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 8207 0.66 0.195592
Target:  5'- gCGCaCGGCcucguagucGCGCUGGUCgGCGGCc-- -3'
miRNA:   3'- aGCG-GCCG---------UGCGGCCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 7784 0.66 0.200659
Target:  5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3'
miRNA:   3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 27247 0.66 0.205841
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5'
26635 3' -65.8 NC_005808.1 + 14341 0.66 0.205841
Target:  5'- cUGCCgGGCcUGCUGGUUCGCGGUGu- -3'
miRNA:   3'- aGCGG-CCGuGCGGCCGGGUGCCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.