miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 25733 0.67 0.170124
Target:  5'- cCGCCGGCugaugacguacaugACGCCGGCagaacugCCGaGGUGGAc -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCCG-------GGUgCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 25684 0.66 0.190637
Target:  5'- -aGCCGGCggauuucggcaACGCUGcucauaccaGcCCCGCGGCGGGg -3'
miRNA:   3'- agCGGCCG-----------UGCGGC---------C-GGGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 25415 0.67 0.158951
Target:  5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3'
miRNA:   3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 25148 0.67 0.176427
Target:  5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3'
miRNA:   3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 24765 0.69 0.112173
Target:  5'- cCGaCUGGCACcgauggacaGCCugggcguggacguGGCCCGCGGCGGg -3'
miRNA:   3'- aGC-GGCCGUG---------CGG-------------CCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 24697 0.67 0.176427
Target:  5'- cCGCCGGCACGCCauguGGUUCgACGuGCc-- -3'
miRNA:   3'- aGCGGCCGUGCGG----CCGGG-UGC-CGcuu -5'
26635 3' -65.8 NC_005808.1 + 24519 0.67 0.150415
Target:  5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3'
miRNA:   3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5'
26635 3' -65.8 NC_005808.1 + 24433 0.7 0.093038
Target:  5'- uUUGUCGGUgccGCGCgCGGCCU-CGGCGAc -3'
miRNA:   3'- -AGCGGCCG---UGCG-GCCGGGuGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 24140 0.69 0.106564
Target:  5'- -aGCCGGCugcGCGCCuGGCCCagcgccucgACGGCu-- -3'
miRNA:   3'- agCGGCCG---UGCGG-CCGGG---------UGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 24012 0.67 0.176427
Target:  5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3'
miRNA:   3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 23759 0.68 0.146885
Target:  5'- aUGCCGGCGCcaccggGCCGauGCgCCGCGGCu-- -3'
miRNA:   3'- aGCGGCCGUG------CGGC--CG-GGUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 23568 0.69 0.12192
Target:  5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3'
miRNA:   3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 23421 0.68 0.1353
Target:  5'- gCGCCGGUcagugcgACGCCGGCCgGgauGCGGAu -3'
miRNA:   3'- aGCGGCCG-------UGCGGCCGGgUgc-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 23091 0.67 0.171904
Target:  5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3'
miRNA:   3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 22897 0.71 0.083406
Target:  5'- cUGUCGGC-UGUCGGCagCGCGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGGCCGg-GUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 22863 0.66 0.200659
Target:  5'- -aGuCCGGCACcaugcugaCCGGCCCGCagGGCGu- -3'
miRNA:   3'- agC-GGCCGUGc-------GGCCGGGUG--CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 22265 0.68 0.1353
Target:  5'- uUCGCCGGC-CGUCaGCgaauggugauagaCCACGGCGu- -3'
miRNA:   3'- -AGCGGCCGuGCGGcCG-------------GGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 22078 0.67 0.167485
Target:  5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3'
miRNA:   3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 21382 0.69 0.12192
Target:  5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3'
miRNA:   3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 21274 0.68 0.143052
Target:  5'- aUGUCGGCGuaagUGUCGGCCCAgCGGuCGGc -3'
miRNA:   3'- aGCGGCCGU----GCGGCCGGGU-GCC-GCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.