Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26635 | 3' | -65.8 | NC_005808.1 | + | 26268 | 0.72 | 0.070723 |
Target: 5'- cCGCCGGcCugGUCGGCUCGCGcaucgcgcGCGAu -3' miRNA: 3'- aGCGGCC-GugCGGCCGGGUGC--------CGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 4273 | 0.72 | 0.063144 |
Target: 5'- gCGCCGGCAUggugaugGCCGuGUCgGCGGUGAAc -3' miRNA: 3'- aGCGGCCGUG-------CGGC-CGGgUGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 13544 | 0.73 | 0.059904 |
Target: 5'- cUGUCGGC-CGCCugacucgguGCCCACGGCGAu -3' miRNA: 3'- aGCGGCCGuGCGGc--------CGGGUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 10196 | 0.76 | 0.034249 |
Target: 5'- aCGUCaagcGCACGCCGGCCCGaugguCGGCGGAu -3' miRNA: 3'- aGCGGc---CGUGCGGCCGGGU-----GCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 1294 | 0.69 | 0.109482 |
Target: 5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3' miRNA: 3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 28553 | 0.69 | 0.118693 |
Target: 5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3' miRNA: 3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7528 | 0.69 | 0.12192 |
Target: 5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3' miRNA: 3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 5203 | 0.68 | 0.139311 |
Target: 5'- aUUGCCGGCua-CCGuGCCCACGuCGAGg -3' miRNA: 3'- -AGCGGCCGugcGGC-CGGGUGCcGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18279 | 0.68 | 0.139311 |
Target: 5'- cUUGCCGGCcgucaGCgGGCCgGUGGCGAc -3' miRNA: 3'- -AGCGGCCGug---CGgCCGGgUGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 33616 | 0.68 | 0.13566 |
Target: 5'- cCGCUGGCG-GCaCGGCCacCGCuGGCGAAu -3' miRNA: 3'- aGCGGCCGUgCG-GCCGG--GUG-CCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 18397 | 0.68 | 0.13566 |
Target: 5'- gCGCCGGU--GgCGGCCaCGuCGGCGAAg -3' miRNA: 3'- aGCGGCCGugCgGCCGG-GU-GCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 23421 | 0.68 | 0.1353 |
Target: 5'- gCGCCGGUcagugcgACGCCGGCCgGgauGCGGAu -3' miRNA: 3'- aGCGGCCG-------UGCGGCCGGgUgc-CGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 22265 | 0.68 | 0.1353 |
Target: 5'- uUCGCCGGC-CGUCaGCgaauggugauagaCCACGGCGu- -3' miRNA: 3'- -AGCGGCCGuGCGGcCG-------------GGUGCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 185 | 0.68 | 0.132097 |
Target: 5'- gUCGCUgGGCACcgucacgcuGCCGGgCgaCACGGCGAAc -3' miRNA: 3'- -AGCGG-CCGUG---------CGGCCgG--GUGCCGCUU- -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 7652 | 0.68 | 0.127594 |
Target: 5'- aCGCCGGCuccuugccguacacGCGCCGuuCUuugGCGGCGAu -3' miRNA: 3'- aGCGGCCG--------------UGCGGCcgGG---UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 10927 | 0.68 | 0.125229 |
Target: 5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3' miRNA: 3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 40577 | 0.68 | 0.125229 |
Target: 5'- -gGCCGGUAUGCCGGUgC-UGGUGGc -3' miRNA: 3'- agCGGCCGUGCGGCCGgGuGCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 20226 | 0.68 | 0.125229 |
Target: 5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3' miRNA: 3'- agCGGCCGuGCggCCGGGugCCGCuu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 23568 | 0.69 | 0.12192 |
Target: 5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3' miRNA: 3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5' |
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26635 | 3' | -65.8 | NC_005808.1 | + | 21382 | 0.69 | 0.12192 |
Target: 5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3' miRNA: 3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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