miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 15463 0.77 0.025835
Target:  5'- gUCGuCCGGCAucuuCGCCGGCCCGCacGCGGAc -3'
miRNA:   3'- -AGC-GGCCGU----GCGGCCGGGUGc-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 36275 0.67 0.154833
Target:  5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3'
miRNA:   3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 691 0.78 0.021194
Target:  5'- aCGCCGG-ACGCCGuGUCCACGGCGc- -3'
miRNA:   3'- aGCGGCCgUGCGGC-CGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 28639 0.66 0.205841
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 13374 0.73 0.053601
Target:  5'- aCGCCGccuacaACGCCGGCCC-CGGCGc- -3'
miRNA:   3'- aGCGGCcg----UGCGGCCGGGuGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 22897 0.71 0.083406
Target:  5'- cUGUCGGC-UGUCGGCagCGCGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGGCCGg-GUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 22863 0.66 0.200659
Target:  5'- -aGuCCGGCACcaugcugaCCGGCCCGCagGGCGu- -3'
miRNA:   3'- agC-GGCCGUGc-------GGCCGGGUG--CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 38613 0.66 0.190637
Target:  5'- gCGagCGGCAgGCCagcGGCCCAgGGgGGAu -3'
miRNA:   3'- aGCg-GCCGUgCGG---CCGGGUgCCgCUU- -5'
26635 3' -65.8 NC_005808.1 + 24697 0.67 0.176427
Target:  5'- cCGCCGGCACGCCauguGGUUCgACGuGCc-- -3'
miRNA:   3'- aGCGGCCGUGCGG----CCGGG-UGC-CGcuu -5'
26635 3' -65.8 NC_005808.1 + 13078 0.67 0.171904
Target:  5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3'
miRNA:   3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 2621 0.67 0.163168
Target:  5'- -aGCCGGCAauuacgaGCgCGGCCCcuACcGCGAAu -3'
miRNA:   3'- agCGGCCGUg------CG-GCCGGG--UGcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 25415 0.67 0.158951
Target:  5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3'
miRNA:   3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 24519 0.67 0.150415
Target:  5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3'
miRNA:   3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5'
26635 3' -65.8 NC_005808.1 + 34930 0.68 0.143052
Target:  5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5'
26635 3' -65.8 NC_005808.1 + 11005 0.68 0.13566
Target:  5'- gUCGCCGcGCAacUGCCcgaGGCCCugcaaacCGGCGGg -3'
miRNA:   3'- -AGCGGC-CGU--GCGG---CCGGGu------GCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 31971 0.69 0.12192
Target:  5'- aCGCCgcaGGCAC-UCGGCCUcgAUGGCGGAa -3'
miRNA:   3'- aGCGG---CCGUGcGGCCGGG--UGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 27518 0.7 0.100945
Target:  5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3'
miRNA:   3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 40706 0.7 0.093038
Target:  5'- -gGUCGaGCGCG-CGGCCCugGGgGAAg -3'
miRNA:   3'- agCGGC-CGUGCgGCCGGGugCCgCUU- -5'
26635 3' -65.8 NC_005808.1 + 41510 0.68 0.145341
Target:  5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3'
miRNA:   3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 14341 0.66 0.205841
Target:  5'- cUGCCgGGCcUGCUGGUUCGCGGUGu- -3'
miRNA:   3'- aGCGG-CCGuGCGGCCGGGUGCCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.