miRNA display CGI


Results 101 - 118 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 7784 0.66 0.200659
Target:  5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3'
miRNA:   3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 27247 0.66 0.205841
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5'
26635 3' -65.8 NC_005808.1 + 25978 0.66 0.181056
Target:  5'- uUCcUCGGUuuccuCGCCGGUCUGCGGCGu- -3'
miRNA:   3'- -AGcGGCCGu----GCGGCCGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 1706 0.66 0.181056
Target:  5'- uUCGCC-GUggGCCGGCgUGCcGGCGAGg -3'
miRNA:   3'- -AGCGGcCGugCGGCCGgGUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 24012 0.67 0.176427
Target:  5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3'
miRNA:   3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 23759 0.68 0.146885
Target:  5'- aUGCCGGCGCcaccggGCCGauGCgCCGCGGCu-- -3'
miRNA:   3'- aGCGGCCGUG------CGGC--CG-GGUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 27422 0.67 0.150811
Target:  5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3'
miRNA:   3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 18469 0.67 0.154833
Target:  5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3'
miRNA:   3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5'
26635 3' -65.8 NC_005808.1 + 42426 0.67 0.154833
Target:  5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3'
miRNA:   3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 12285 0.67 0.158951
Target:  5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 4678 0.67 0.163168
Target:  5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3'
miRNA:   3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 27701 0.67 0.163168
Target:  5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 41324 0.67 0.163168
Target:  5'- gUCGCUGGCcgggaauaccgGCGCUcGCCgGaCGGCGGAa -3'
miRNA:   3'- -AGCGGCCG-----------UGCGGcCGGgU-GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 22078 0.67 0.167485
Target:  5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3'
miRNA:   3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 27808 0.67 0.170567
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 23091 0.67 0.171904
Target:  5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3'
miRNA:   3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 40716 0.67 0.171904
Target:  5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3'
miRNA:   3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5'
26635 3' -65.8 NC_005808.1 + 14341 0.66 0.205841
Target:  5'- cUGCCgGGCcUGCUGGUUCGCGGUGu- -3'
miRNA:   3'- aGCGG-CCGuGCGGCCGGGUGCCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.