miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26636 3' -57.7 NC_005808.1 + 2283 1.12 0.000266
Target:  5'- uGCUGCGCGUGGUGCUACCCGACGAGGg -3'
miRNA:   3'- -CGACGCGCACCACGAUGGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 39773 0.81 0.054047
Target:  5'- cGCUGCGCGUGGccGCgagcaccugGCCCGACGAa- -3'
miRNA:   3'- -CGACGCGCACCa-CGa--------UGGGCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 25138 0.79 0.080733
Target:  5'- cGCUGCGCuggGUGGcgaUGCUGCCCGAUGGu- -3'
miRNA:   3'- -CGACGCG---CACC---ACGAUGGGCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 14801 0.78 0.090178
Target:  5'- uGCUGCGCGUacugccuGGgGCUACCgGGCGcAGGg -3'
miRNA:   3'- -CGACGCGCA-------CCaCGAUGGgCUGC-UCC- -5'
26636 3' -57.7 NC_005808.1 + 23929 0.72 0.223041
Target:  5'- gGCauagGCGUGaUGGUcagGCgccGCCCGGCGAGGu -3'
miRNA:   3'- -CGa---CGCGC-ACCA---CGa--UGGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 12523 0.71 0.273841
Target:  5'- --aGCGCGUcgaGGUGCUGCUCGACcucGGc -3'
miRNA:   3'- cgaCGCGCA---CCACGAUGGGCUGcu-CC- -5'
26636 3' -57.7 NC_005808.1 + 34616 0.71 0.287911
Target:  5'- --cGC-CGUGGUGCUgcuGCCUGACGAa- -3'
miRNA:   3'- cgaCGcGCACCACGA---UGGGCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 28411 0.7 0.3416
Target:  5'- --cGCGC-----GCUGCCCGACGAGGc -3'
miRNA:   3'- cgaCGCGcaccaCGAUGGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 16117 0.69 0.366729
Target:  5'- gGCUGCaCGUcGGUGgc-CCCGACGuAGGa -3'
miRNA:   3'- -CGACGcGCA-CCACgauGGGCUGC-UCC- -5'
26636 3' -57.7 NC_005808.1 + 1670 0.68 0.439691
Target:  5'- uUUGCGCGUGaUGCUGCC--GCGcAGGu -3'
miRNA:   3'- cGACGCGCACcACGAUGGgcUGC-UCC- -5'
26636 3' -57.7 NC_005808.1 + 27852 0.68 0.43969
Target:  5'- gGCUGCGCGgcgcgcgcuucgUGuacGUGUccgaGCCgGACGAGGg -3'
miRNA:   3'- -CGACGCGC------------AC---CACGa---UGGgCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 30277 0.68 0.43969
Target:  5'- --aGUGCGUGcgcGUGCUcaaGCCCGGCGGc- -3'
miRNA:   3'- cgaCGCGCAC---CACGA---UGGGCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 16644 0.68 0.411352
Target:  5'- --gGUGCa-GGUGCcGgCCGACGAGGg -3'
miRNA:   3'- cgaCGCGcaCCACGaUgGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 20687 0.67 0.47813
Target:  5'- -aUGCGCGcacucuaUGG-GCUGgaCGACGAGGc -3'
miRNA:   3'- cgACGCGC-------ACCaCGAUggGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 5469 0.67 0.449382
Target:  5'- cGCcGgGCGgcgaGGUGUUG-CCGAUGGGGg -3'
miRNA:   3'- -CGaCgCGCa---CCACGAUgGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 36042 0.67 0.449381
Target:  5'- aGCggGCGCGUGGcGCUGCgCG-CGGa- -3'
miRNA:   3'- -CGa-CGCGCACCaCGAUGgGCuGCUcc -5'
26636 3' -57.7 NC_005808.1 + 10603 0.67 0.459189
Target:  5'- cGUUGCGCGUGGcgGCggaaagcgUGgCCGGCGGu- -3'
miRNA:   3'- -CGACGCGCACCa-CG--------AUgGGCUGCUcc -5'
26636 3' -57.7 NC_005808.1 + 22587 0.67 0.479138
Target:  5'- cGCUGCGCGUGcucGCUGCggggaUGAUGGcGGg -3'
miRNA:   3'- -CGACGCGCACca-CGAUGg----GCUGCU-CC- -5'
26636 3' -57.7 NC_005808.1 + 1708 0.66 0.562658
Target:  5'- --cGC-CGUGGgccgGCgugCCGGCGAGGg -3'
miRNA:   3'- cgaCGcGCACCa---CGaugGGCUGCUCC- -5'
26636 3' -57.7 NC_005808.1 + 31306 0.66 0.562658
Target:  5'- gGCgacCGCGUGGUG--GCCCGGCu-GGa -3'
miRNA:   3'- -CGac-GCGCACCACgaUGGGCUGcuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.