miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26638 3' -51 NC_005808.1 + 2772 1.11 0.001302
Target:  5'- cGACAUCGCAACCUCAUCGACCAGAUCa -3'
miRNA:   3'- -CUGUAGCGUUGGAGUAGCUGGUCUAG- -5'
26638 3' -51 NC_005808.1 + 18975 0.75 0.352576
Target:  5'- cGCGggCGcCGACCUCAUCGACCuGAUg -3'
miRNA:   3'- cUGUa-GC-GUUGGAGUAGCUGGuCUAg -5'
26638 3' -51 NC_005808.1 + 38711 0.71 0.547135
Target:  5'- cGACAUCGagaaauACCUCGUCGAgCGcGUCa -3'
miRNA:   3'- -CUGUAGCgu----UGGAGUAGCUgGUcUAG- -5'
26638 3' -51 NC_005808.1 + 1297 0.71 0.547135
Target:  5'- cGACAcCGCuuucgaccGCCUCAUCGGCCAuGAg- -3'
miRNA:   3'- -CUGUaGCGu-------UGGAGUAGCUGGU-CUag -5'
26638 3' -51 NC_005808.1 + 29010 0.71 0.557359
Target:  5'- cGACGUagGCGACCaggCGccgcgcuUCGGCCAGGUCg -3'
miRNA:   3'- -CUGUAg-CGUUGGa--GU-------AGCUGGUCUAG- -5'
26638 3' -51 NC_005808.1 + 17853 0.71 0.581415
Target:  5'- -cCAcCGUGGCCUCGUCGcCCAGGUa -3'
miRNA:   3'- cuGUaGCGUUGGAGUAGCuGGUCUAg -5'
26638 3' -51 NC_005808.1 + 9649 0.7 0.604519
Target:  5'- cGAgGUgCGCAACgUguUCGACCGGAUg -3'
miRNA:   3'- -CUgUA-GCGUUGgAguAGCUGGUCUAg -5'
26638 3' -51 NC_005808.1 + 18887 0.7 0.616115
Target:  5'- cGCAaaauUCGCAGCUUCcugCGccGCCAGAUCa -3'
miRNA:   3'- cUGU----AGCGUUGGAGua-GC--UGGUCUAG- -5'
26638 3' -51 NC_005808.1 + 32300 0.7 0.627726
Target:  5'- cGCGUugCGCGACCUCAUCGccgccaucaagGCCGGcGUCc -3'
miRNA:   3'- cUGUA--GCGUUGGAGUAGC-----------UGGUC-UAG- -5'
26638 3' -51 NC_005808.1 + 28327 0.69 0.672946
Target:  5'- cGGCGUCGgAcucgauggccuugGCCUCGUCGGgCAGcgCg -3'
miRNA:   3'- -CUGUAGCgU-------------UGGAGUAGCUgGUCuaG- -5'
26638 3' -51 NC_005808.1 + 35210 0.69 0.6741
Target:  5'- cGGCcuUCGCGcgaaugGCCUUGcaccaggacUCGACCAGAUCg -3'
miRNA:   3'- -CUGu-AGCGU------UGGAGU---------AGCUGGUCUAG- -5'
26638 3' -51 NC_005808.1 + 5289 0.69 0.6741
Target:  5'- cGGCGUUGuCGGCCacggCGUCGAuauuuuCCAGGUCg -3'
miRNA:   3'- -CUGUAGC-GUUGGa---GUAGCU------GGUCUAG- -5'
26638 3' -51 NC_005808.1 + 16603 0.69 0.685614
Target:  5'- aGCAagGCGGCCUguacggcuaUAUCGGCCAGAc- -3'
miRNA:   3'- cUGUagCGUUGGA---------GUAGCUGGUCUag -5'
26638 3' -51 NC_005808.1 + 35004 0.69 0.697072
Target:  5'- cGACAUUGCu-UCUCAcCGgggGCCAGGUCg -3'
miRNA:   3'- -CUGUAGCGuuGGAGUaGC---UGGUCUAG- -5'
26638 3' -51 NC_005808.1 + 18627 0.69 0.697072
Target:  5'- cGCGagCGCGGCCUCcacCGACguGAUCg -3'
miRNA:   3'- cUGUa-GCGUUGGAGua-GCUGguCUAG- -5'
26638 3' -51 NC_005808.1 + 27359 0.69 0.719762
Target:  5'- cGACcUCGCAGCaCUCGuccagccauUCGGCCAGcaaAUCc -3'
miRNA:   3'- -CUGuAGCGUUG-GAGU---------AGCUGGUC---UAG- -5'
26638 3' -51 NC_005808.1 + 30186 0.68 0.740961
Target:  5'- cGGCGUguucuggCGCGGCCUCAUCGcCUGGGa- -3'
miRNA:   3'- -CUGUA-------GCGUUGGAGUAGCuGGUCUag -5'
26638 3' -51 NC_005808.1 + 19689 0.68 0.774559
Target:  5'- cGAUGUCGCGGCCcgCAU-GACCccggacggcaAGAUCg -3'
miRNA:   3'- -CUGUAGCGUUGGa-GUAgCUGG----------UCUAG- -5'
26638 3' -51 NC_005808.1 + 8671 0.67 0.782989
Target:  5'- cGGCAUUGCGugccgcgcgcACCUCGgcguugguguacUGGCCGGGUCg -3'
miRNA:   3'- -CUGUAGCGU----------UGGAGUa-----------GCUGGUCUAG- -5'
26638 3' -51 NC_005808.1 + 8348 0.67 0.795424
Target:  5'- ----cCGCGGCCUgGUCGAuagcgugcgUCAGAUCg -3'
miRNA:   3'- cuguaGCGUUGGAgUAGCU---------GGUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.