miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2664 3' -60.4 NC_001491.2 + 104376 0.66 0.753237
Target:  5'- gCGCUUCUAUuucuuggaCGCCCaUGUAGCGuGUCa -3'
miRNA:   3'- gGCGAAGAUG--------GCGGG-GCGUCGUcCGG- -5'
2664 3' -60.4 NC_001491.2 + 2412 0.66 0.753237
Target:  5'- gUGCaUCcagGCgGCCCUccgucuCAGCGGGCCg -3'
miRNA:   3'- gGCGaAGa--UGgCGGGGc-----GUCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 114319 0.66 0.753237
Target:  5'- uCCGUUUUgacaGCCaggGCCUCGCAcucuuGCAGuGCCu -3'
miRNA:   3'- -GGCGAAGa---UGG---CGGGGCGU-----CGUC-CGG- -5'
2664 3' -60.4 NC_001491.2 + 43430 0.66 0.753237
Target:  5'- gCCGCaggaagcgUC-ACUGCCCCuccucGgAGCGGGUCa -3'
miRNA:   3'- -GGCGa-------AGaUGGCGGGG-----CgUCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 115565 0.66 0.735408
Target:  5'- gUCGUUUCUccCCGgCCCGCuguuggcggugcuucGCAGGCg -3'
miRNA:   3'- -GGCGAAGAu-GGCgGGGCGu--------------CGUCCGg -5'
2664 3' -60.4 NC_001491.2 + 95382 0.66 0.734461
Target:  5'- uUGCUgagCUAucCCGCCCa--AGCGGGUCu -3'
miRNA:   3'- gGCGAa--GAU--GGCGGGgcgUCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 9825 0.66 0.733513
Target:  5'- cCCGCgauUCca-CGCCCCGCcgaggaaauacAGCucgcggaGGGCCg -3'
miRNA:   3'- -GGCGa--AGaugGCGGGGCG-----------UCG-------UCCGG- -5'
2664 3' -60.4 NC_001491.2 + 12098 0.66 0.721116
Target:  5'- gCCGCUggaguugGCgGCCCCcccggccGCGGCugcggcgaagguggGGGCCa -3'
miRNA:   3'- -GGCGAaga----UGgCGGGG-------CGUCG--------------UCCGG- -5'
2664 3' -60.4 NC_001491.2 + 28304 0.66 0.719197
Target:  5'- aCCGCUgcUCgUACCgGUccucggaguucagugCCCGCAGCGuGGCg -3'
miRNA:   3'- -GGCGA--AG-AUGG-CG---------------GGGCGUCGU-CCGg -5'
2664 3' -60.4 NC_001491.2 + 3882 0.66 0.705694
Target:  5'- uCCgGCcUCc-CCGCCUCGUcucucgGGUAGGCCa -3'
miRNA:   3'- -GG-CGaAGauGGCGGGGCG------UCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 8895 0.66 0.705694
Target:  5'- cCCGCU---GCgCGCCaCGCuGCGGGCa -3'
miRNA:   3'- -GGCGAagaUG-GCGGgGCGuCGUCCGg -5'
2664 3' -60.4 NC_001491.2 + 12862 0.66 0.705694
Target:  5'- aCGCgcc-GCCGCCUgUGCcuGCGGGCCu -3'
miRNA:   3'- gGCGaagaUGGCGGG-GCGu-CGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 35250 0.66 0.705694
Target:  5'- aUGCgg--GCCGCCCUGacuccGCGGGUCg -3'
miRNA:   3'- gGCGaagaUGGCGGGGCgu---CGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 136284 0.67 0.695978
Target:  5'- gCCGCUgguaUAgCGCgCCGgGGCuggcGGCCu -3'
miRNA:   3'- -GGCGAag--AUgGCGgGGCgUCGu---CCGG- -5'
2664 3' -60.4 NC_001491.2 + 69197 0.67 0.695978
Target:  5'- aCCGCcUCgugGCgGUucaCCUGUAGCuGGCCc -3'
miRNA:   3'- -GGCGaAGa--UGgCG---GGGCGUCGuCCGG- -5'
2664 3' -60.4 NC_001491.2 + 147204 0.67 0.695978
Target:  5'- -aGCga-UugCGUCUagaggaGCAGCAGGCCc -3'
miRNA:   3'- ggCGaagAugGCGGGg-----CGUCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 100749 0.67 0.676403
Target:  5'- gCCGCcgggGCCGUCCCggacgcggcGCAGCGGGg- -3'
miRNA:   3'- -GGCGaagaUGGCGGGG---------CGUCGUCCgg -5'
2664 3' -60.4 NC_001491.2 + 10134 0.67 0.666561
Target:  5'- gCGCcgg-GCCG-CCCGCGG-AGGCCu -3'
miRNA:   3'- gGCGaagaUGGCgGGGCGUCgUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 31806 0.67 0.666561
Target:  5'- uCCGCcgUCUccgACUcccgaGCCCCGCGGagggaAGGCg -3'
miRNA:   3'- -GGCGa-AGA---UGG-----CGGGGCGUCg----UCCGg -5'
2664 3' -60.4 NC_001491.2 + 8676 0.67 0.666561
Target:  5'- -gGCgUUCUG-CGCCCCGCcGUGGcGCCc -3'
miRNA:   3'- ggCG-AAGAUgGCGGGGCGuCGUC-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.