miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2664 3' -60.4 NC_001491.2 + 84788 1.13 0.000618
Target:  5'- gCCGCUUCUACCGCCCCGCAGCAGGCCg -3'
miRNA:   3'- -GGCGAAGAUGGCGGGGCGUCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 12611 0.76 0.226444
Target:  5'- gCCGCggCagcgGCCGCCCCGgGGCGGGa- -3'
miRNA:   3'- -GGCGaaGa---UGGCGGGGCgUCGUCCgg -5'
2664 3' -60.4 NC_001491.2 + 76179 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 76115 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 76083 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 76147 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 76051 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 76019 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 75987 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 76211 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 76243 0.76 0.231843
Target:  5'- cCCGCcgC-GCCGCCgCCGCAGCAGcCCu -3'
miRNA:   3'- -GGCGaaGaUGGCGG-GGCGUCGUCcGG- -5'
2664 3' -60.4 NC_001491.2 + 90105 0.75 0.254531
Target:  5'- gCCGCUUCcGCCGCCgCGCGccGCucggAGGCUa -3'
miRNA:   3'- -GGCGAAGaUGGCGGgGCGU--CG----UCCGG- -5'
2664 3' -60.4 NC_001491.2 + 32445 0.74 0.285416
Target:  5'- cCCGCUccCaGCCGCCCgGgAGgAGGCCu -3'
miRNA:   3'- -GGCGAa-GaUGGCGGGgCgUCgUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 58178 0.74 0.291937
Target:  5'- gCCGgUUCUGgCGUCCauCAGUAGGCCa -3'
miRNA:   3'- -GGCgAAGAUgGCGGGgcGUCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 6003 0.74 0.312197
Target:  5'- gCGCUUCgACCGCUaggUCGaAGCGGGCCu -3'
miRNA:   3'- gGCGAAGaUGGCGG---GGCgUCGUCCGG- -5'
2664 3' -60.4 NC_001491.2 + 51310 0.74 0.312197
Target:  5'- uUCGCggcUCUGCCgGCCCCGCucuuGGCGGGg- -3'
miRNA:   3'- -GGCGa--AGAUGG-CGGGGCG----UCGUCCgg -5'
2664 3' -60.4 NC_001491.2 + 2987 0.73 0.326287
Target:  5'- gCgGCUgggCUGCUGCCCCcgGgAGCGGGCg -3'
miRNA:   3'- -GgCGAa--GAUGGCGGGG--CgUCGUCCGg -5'
2664 3' -60.4 NC_001491.2 + 24722 0.73 0.363546
Target:  5'- gCCGCgac-GCCGCCCCGCcccggggacccGCGGGCg -3'
miRNA:   3'- -GGCGaagaUGGCGGGGCGu----------CGUCCGg -5'
2664 3' -60.4 NC_001491.2 + 2662 0.72 0.371343
Target:  5'- aCGCgcCUGaauCCGCCCCGaCGGUcgGGGCCc -3'
miRNA:   3'- gGCGaaGAU---GGCGGGGC-GUCG--UCCGG- -5'
2664 3' -60.4 NC_001491.2 + 2468 0.72 0.379253
Target:  5'- gCGCgccgUCccggGCCgggggGCCgCUGCAGCGGGCCg -3'
miRNA:   3'- gGCGa---AGa---UGG-----CGG-GGCGUCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.