miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 3' -57.1 NC_005808.1 + 24653 0.67 0.469656
Target:  5'- gCAAGGacacgccggacggcCCGACcguGGcCGGCC-UCGCCa -3'
miRNA:   3'- aGUUCC--------------GGCUGu--UCaGCCGGcAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 27573 0.68 0.462652
Target:  5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3'
miRNA:   3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5'
26641 3' -57.1 NC_005808.1 + 36003 0.68 0.462652
Target:  5'- cCGGGgaaGCCGuCGuAGUUGGCCuugagGUCGCCa -3'
miRNA:   3'- aGUUC---CGGCuGU-UCAGCCGG-----CAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 18748 0.68 0.462652
Target:  5'- cCGAGGCCcGCGugguGUaacaGGCCGggggcgggCGCCg -3'
miRNA:   3'- aGUUCCGGcUGUu---CAg---CCGGCa-------GCGG- -5'
26641 3' -57.1 NC_005808.1 + 37675 0.68 0.462652
Target:  5'- cCGAGGgCaAgAAGcUGGUCGUCGCCg -3'
miRNA:   3'- aGUUCCgGcUgUUCaGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 23298 0.68 0.462652
Target:  5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3'
miRNA:   3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5'
26641 3' -57.1 NC_005808.1 + 8016 0.68 0.451759
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 4644 0.68 0.451759
Target:  5'- gCAGGGUCGGCAAgaucggacagguuGUUGGCgGgcaccagcgCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUU-------------CAGCCGgCa--------GCGG- -5'
26641 3' -57.1 NC_005808.1 + 30194 0.68 0.442951
Target:  5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3'
miRNA:   3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 41877 0.68 0.442951
Target:  5'- cCAGGcGCuCGAC---UUGGCCGUgGCCg -3'
miRNA:   3'- aGUUC-CG-GCUGuucAGCCGGCAgCGG- -5'
26641 3' -57.1 NC_005808.1 + 14377 0.68 0.441979
Target:  5'- cCAAGGCgCGcgccaguucagcaACGAcGUgGGCCGcaUCGCCg -3'
miRNA:   3'- aGUUCCG-GC-------------UGUU-CAgCCGGC--AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 40283 0.68 0.43328
Target:  5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3'
miRNA:   3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 18331 0.68 0.43328
Target:  5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3'
miRNA:   3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5'
26641 3' -57.1 NC_005808.1 + 2491 0.68 0.423732
Target:  5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3'
miRNA:   3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5'
26641 3' -57.1 NC_005808.1 + 330 0.69 0.414312
Target:  5'- gUC-AGGCUGGCGGuggcGUCgcgcagcaGGCCGUcCGCCa -3'
miRNA:   3'- -AGuUCCGGCUGUU----CAG--------CCGGCA-GCGG- -5'
26641 3' -57.1 NC_005808.1 + 38476 0.69 0.405021
Target:  5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3'
miRNA:   3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5'
26641 3' -57.1 NC_005808.1 + 28392 0.69 0.405021
Target:  5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3'
miRNA:   3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5'
26641 3' -57.1 NC_005808.1 + 11407 0.69 0.395863
Target:  5'- cCAGGGUcuugagcagCGGCGAGcCGGCgugcagGUCGCCg -3'
miRNA:   3'- aGUUCCG---------GCUGUUCaGCCGg-----CAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 5423 0.69 0.395863
Target:  5'- ----uGUCGAgCAuGUUGGCUGUCGCCa -3'
miRNA:   3'- aguucCGGCU-GUuCAGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 16181 0.69 0.386839
Target:  5'- gUCGGGGCCaccGACGugcAGcCGGUCGUgGUCa -3'
miRNA:   3'- -AGUUCCGG---CUGU---UCaGCCGGCAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.