Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26644 | 5' | -50.4 | NC_005808.1 | + | 24699 | 0.76 | 0.377692 |
Target: 5'- cCAGGCuGucCAUCGGUGcCAGuCGGUCGGg -3' miRNA: 3'- -GUUCG-CuuGUAGUUAC-GUC-GCCAGCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 25906 | 0.66 | 0.90585 |
Target: 5'- uCAGGCGggUuUCGAcuUGCAGCuugCGGu -3' miRNA: 3'- -GUUCGCuuGuAGUU--ACGUCGccaGCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 26031 | 0.68 | 0.821765 |
Target: 5'- -cGGCGAugGCAUCAAaGCccgcGCGG-CGGg -3' miRNA: 3'- guUCGCU--UGUAGUUaCGu---CGCCaGCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 27920 | 0.67 | 0.849756 |
Target: 5'- --cGCGGACAcguUCuugaGCAGCGGcgCGGc -3' miRNA: 3'- guuCGCUUGU---AGuua-CGUCGCCa-GCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 32188 | 0.68 | 0.791789 |
Target: 5'- --cGgGGGCGUCGAggucgGCAGCGGcCaGGg -3' miRNA: 3'- guuCgCUUGUAGUUa----CGUCGCCaG-CC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 32415 | 0.66 | 0.891246 |
Target: 5'- -cGGCGAccGCAgCGAccuggGCGGCGGuugUCGGg -3' miRNA: 3'- guUCGCU--UGUaGUUa----CGUCGCC---AGCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 34541 | 0.7 | 0.670394 |
Target: 5'- -cGGUGAACugaugGUCGA-GCAGCGGUUGa -3' miRNA: 3'- guUCGCUUG-----UAGUUaCGUCGCCAGCc -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 35411 | 0.66 | 0.883504 |
Target: 5'- gCGGGCcGAUGUCGccggccuuGUGCAGCuucucggcgguGGUCGGa -3' miRNA: 3'- -GUUCGcUUGUAGU--------UACGUCG-----------CCAGCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 38865 | 0.66 | 0.891246 |
Target: 5'- -cGGuCGGGCAgc-AUGaccaGGCGGUCGGg -3' miRNA: 3'- guUC-GCUUGUaguUACg---UCGCCAGCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 39827 | 0.78 | 0.285001 |
Target: 5'- --uGCGcAACGUCGAggugucgGCAGUGGUCGGc -3' miRNA: 3'- guuCGC-UUGUAGUUa------CGUCGCCAGCC- -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 40325 | 0.67 | 0.83133 |
Target: 5'- -cAGCGAACccaucGUCAacGUGguGCGcGUCGa -3' miRNA: 3'- guUCGCUUG-----UAGU--UACguCGC-CAGCc -5' |
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26644 | 5' | -50.4 | NC_005808.1 | + | 42130 | 0.67 | 0.840665 |
Target: 5'- -uGGCGAuuGUCGAaGCGGUGGUgcgCGGc -3' miRNA: 3'- guUCGCUugUAGUUaCGUCGCCA---GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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