miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 15209 0.75 0.45071
Target:  5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3'
miRNA:   3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 621 0.75 0.45071
Target:  5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3'
miRNA:   3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5'
26645 3' -50.7 NC_005808.1 + 22784 0.76 0.382738
Target:  5'- gGuCAACGCCcuGCGGGCcgGUCAGCAUGGu -3'
miRNA:   3'- gCuGUUGCGG--CGCUUG--UAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 35472 0.76 0.373599
Target:  5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3'
miRNA:   3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5'
26645 3' -50.7 NC_005808.1 + 27780 0.76 0.370885
Target:  5'- gGACAcguacacgaagcgcGCGCCGCGcAGCcgCAGCACGu -3'
miRNA:   3'- gCUGU--------------UGCGGCGC-UUGuaGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 3544 0.71 0.671226
Target:  5'- uGcCAGCuGCCGcCGAACAgcgCAGCAgCGGg -3'
miRNA:   3'- gCuGUUG-CGGC-GCUUGUa--GUUGU-GCC- -5'
26645 3' -50.7 NC_005808.1 + 37138 0.71 0.68252
Target:  5'- aCGACcGCGgCGUGAugGUCGAUACc- -3'
miRNA:   3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 24537 0.69 0.790569
Target:  5'- gGugGAUGaCCGCGuggucGCG-CAGCGCGGc -3'
miRNA:   3'- gCugUUGC-GGCGCu----UGUaGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 388 0.69 0.780353
Target:  5'- aGACGAUGCCcaggGCGccCAccagCAGCACGGc -3'
miRNA:   3'- gCUGUUGCGG----CGCuuGUa---GUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 804 0.69 0.777255
Target:  5'- cCGGCGacGCGCCGCgcccagcccuugccGAACGUCGGCcaggUGGg -3'
miRNA:   3'- -GCUGU--UGCGGCG--------------CUUGUAGUUGu---GCC- -5'
26645 3' -50.7 NC_005808.1 + 17288 0.69 0.769973
Target:  5'- aCGAagcCGGCGCCGCGGGCGcgCAuccauuccggcAUAUGGg -3'
miRNA:   3'- -GCU---GUUGCGGCGCUUGUa-GU-----------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 4926 0.69 0.769973
Target:  5'- uCGGCAGCGaugcCCGCGAcgGUCuGCACGu -3'
miRNA:   3'- -GCUGUUGC----GGCGCUugUAGuUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 26984 0.69 0.767878
Target:  5'- cCGAcCGACGCUGCaaGAACuggggcuacagCGGCGCGGa -3'
miRNA:   3'- -GCU-GUUGCGGCG--CUUGua---------GUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 25696 0.69 0.748768
Target:  5'- uCGGCAACGCUGCucAUAcCAGCcccGCGGc -3'
miRNA:   3'- -GCUGUUGCGGCGcuUGUaGUUG---UGCC- -5'
26645 3' -50.7 NC_005808.1 + 7307 0.69 0.748768
Target:  5'- gGAUGGCGCCGuCGAugGUCugcgAACGCa- -3'
miRNA:   3'- gCUGUUGCGGC-GCUugUAG----UUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 14379 0.69 0.747694
Target:  5'- gGGCAuccGCGCCGCGGaacguagGCGUagcgaAGCugGGc -3'
miRNA:   3'- gCUGU---UGCGGCGCU-------UGUAg----UUGugCC- -5'
26645 3' -50.7 NC_005808.1 + 41716 0.7 0.727057
Target:  5'- -aACAACGCgGCGGcccuCGUCGAUAgGGa -3'
miRNA:   3'- gcUGUUGCGgCGCUu---GUAGUUGUgCC- -5'
26645 3' -50.7 NC_005808.1 + 17197 0.7 0.727057
Target:  5'- uGAUuuCGCCGCcgccgaagGAGCGUUgcagGACGCGGa -3'
miRNA:   3'- gCUGuuGCGGCG--------CUUGUAG----UUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 28720 0.7 0.723763
Target:  5'- uGuCGGCGCaCGCGAggaugagcgccuugGCAUCGuccaGCGCGGu -3'
miRNA:   3'- gCuGUUGCG-GCGCU--------------UGUAGU----UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 9209 0.7 0.693762
Target:  5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3'
miRNA:   3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.