miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 35294 0.67 0.712392
Target:  5'- cGUCGuuCGuCCAGCGgcgGGCACCGcGGCg -3'
miRNA:   3'- -CGGUu-GC-GGUUGCag-UUGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 4067 0.67 0.712392
Target:  5'- gGCCGGCGCguuuugggcggaCAucuaucugcuagGCGUCAACcaccugACCGaUGGCa -3'
miRNA:   3'- -CGGUUGCG------------GU------------UGCAGUUG------UGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 8959 0.67 0.716789
Target:  5'- cGCCGauaGCGCCAuucacaaugaugcccGCGcCcGCuuCGUGGCg -3'
miRNA:   3'- -CGGU---UGCGGU---------------UGCaGuUGugGCACCG- -5'
26645 5' -53 NC_005808.1 + 39397 0.67 0.723357
Target:  5'- aGCUuccGCGCCAGauaGUCGGC-CCGUGccuuuGCg -3'
miRNA:   3'- -CGGu--UGCGGUUg--CAGUUGuGGCAC-----CG- -5'
26645 5' -53 NC_005808.1 + 41981 0.67 0.744989
Target:  5'- cGCCGAgGCUGAgGcCAucauCGCCGacaUGGCg -3'
miRNA:   3'- -CGGUUgCGGUUgCaGUu---GUGGC---ACCG- -5'
26645 5' -53 NC_005808.1 + 36053 0.67 0.723357
Target:  5'- uGUCGAUGaCCAGCGg--GCG-CGUGGCg -3'
miRNA:   3'- -CGGUUGC-GGUUGCaguUGUgGCACCG- -5'
26645 5' -53 NC_005808.1 + 29352 0.67 0.723357
Target:  5'- gGCCAGCaguucgucGCCuaccACGUCcaccccGACACCGgccGGCc -3'
miRNA:   3'- -CGGUUG--------CGGu---UGCAG------UUGUGGCa--CCG- -5'
26645 5' -53 NC_005808.1 + 2161 0.67 0.723357
Target:  5'- cGUCAuuggGCGCgcuaCAugGaCGACAUCGUGGUg -3'
miRNA:   3'- -CGGU----UGCG----GUugCaGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 4946 0.67 0.712392
Target:  5'- -aCGAgGCCGcCGUCGccGCGCUG-GGCa -3'
miRNA:   3'- cgGUUgCGGUuGCAGU--UGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 6327 0.67 0.712392
Target:  5'- cCCAGCGCgCAGa-UCAaccGCACCGUuaccGGCg -3'
miRNA:   3'- cGGUUGCG-GUUgcAGU---UGUGGCA----CCG- -5'
26645 5' -53 NC_005808.1 + 19836 0.67 0.734227
Target:  5'- uGCCcAgGCCGGuuuUGuUCAGCAgCGUGGUg -3'
miRNA:   3'- -CGGuUgCGGUU---GC-AGUUGUgGCACCG- -5'
26645 5' -53 NC_005808.1 + 14540 0.67 0.733145
Target:  5'- cGCCGGCGCCGgacaacaGCGaCGAgaaacccgccccUACCG-GGCu -3'
miRNA:   3'- -CGGUUGCGGU-------UGCaGUU------------GUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 40727 0.67 0.730977
Target:  5'- gGCCAGCGCCGGCcacgggcugaaccugCAAgACgGcGGCa -3'
miRNA:   3'- -CGGUUGCGGUUGca-------------GUUgUGgCaCCG- -5'
26645 5' -53 NC_005808.1 + 10545 0.67 0.729891
Target:  5'- cGCCGccACGCgCAACGgguauugcuggaaCAGCGCCucgGGCg -3'
miRNA:   3'- -CGGU--UGCG-GUUGCa------------GUUGUGGca-CCG- -5'
26645 5' -53 NC_005808.1 + 3731 0.67 0.744989
Target:  5'- uGCCGuucACGCCGguggugggcACGUCggUGCCGccGCu -3'
miRNA:   3'- -CGGU---UGCGGU---------UGCAGuuGUGGCacCG- -5'
26645 5' -53 NC_005808.1 + 5560 0.67 0.712392
Target:  5'- cGCCAcgguaucgacgGCGCCAACGcuggcCGcCACCGUGuCg -3'
miRNA:   3'- -CGGU-----------UGCGGUUGCa----GUuGUGGCACcG- -5'
26645 5' -53 NC_005808.1 + 5179 0.67 0.712392
Target:  5'- uGCCAcCGCCugcacguCGUCGAUAUUGccGGCu -3'
miRNA:   3'- -CGGUuGCGGuu-----GCAGUUGUGGCa-CCG- -5'
26645 5' -53 NC_005808.1 + 8745 0.67 0.701343
Target:  5'- aCCAACGCCGAgGUC-GCGC---GGCa -3'
miRNA:   3'- cGGUUGCGGUUgCAGuUGUGgcaCCG- -5'
26645 5' -53 NC_005808.1 + 25710 0.67 0.701343
Target:  5'- cGCCGGCagaacuGCCGAgGUgGacGCGCUGcUGGCg -3'
miRNA:   3'- -CGGUUG------CGGUUgCAgU--UGUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 36860 0.67 0.712392
Target:  5'- cGgCAGCGCCAGCGgauagucgggCAuggcgugccgcaGCACCGUG-Cg -3'
miRNA:   3'- -CgGUUGCGGUUGCa---------GU------------UGUGGCACcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.