miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 3' -57.1 NC_005808.1 + 413 0.67 0.488433
Target:  5'- cAGCACggcggugauCGUCGGC-CGUACCuUGUCGu -3'
miRNA:   3'- cUCGUG---------GCAGUCGuGCGUGG-ACAGCu -5'
26646 3' -57.1 NC_005808.1 + 3609 0.66 0.497813
Target:  5'- -uGCGCUGUucggcggCAGCugGCACUacacGUCGAa -3'
miRNA:   3'- cuCGUGGCA-------GUCGugCGUGGa---CAGCU- -5'
26646 3' -57.1 NC_005808.1 + 3869 0.67 0.467894
Target:  5'- aGGCGCCGUCgcuguaGGcCGCGCugCcGUCGc -3'
miRNA:   3'- cUCGUGGCAG------UC-GUGCGugGaCAGCu -5'
26646 3' -57.1 NC_005808.1 + 4195 0.74 0.181092
Target:  5'- uGGGCGCCGaaaaguuggaaUCGGCGCGCACCgugccaucGUCGc -3'
miRNA:   3'- -CUCGUGGC-----------AGUCGUGCGUGGa-------CAGCu -5'
26646 3' -57.1 NC_005808.1 + 4459 0.68 0.418603
Target:  5'- uGGCACCGUCAuGCACaacgaccguGUuCUUGUCGGu -3'
miRNA:   3'- cUCGUGGCAGU-CGUG---------CGuGGACAGCU- -5'
26646 3' -57.1 NC_005808.1 + 5444 1.08 0.000484
Target:  5'- uGAGCACCGUCAGCACGCACCUGUCGAg -3'
miRNA:   3'- -CUCGUGGCAGUCGUGCGUGGACAGCU- -5'
26646 3' -57.1 NC_005808.1 + 5623 0.68 0.42821
Target:  5'- uGGCGCCGUCgauaccguGGCGgGCgACCUGggCGGa -3'
miRNA:   3'- cUCGUGGCAG--------UCGUgCG-UGGACa-GCU- -5'
26646 3' -57.1 NC_005808.1 + 8663 0.67 0.488433
Target:  5'- -cGCGCgGUCGGCauugcgugccgcGCGCACCUcggcGUUGGu -3'
miRNA:   3'- cuCGUGgCAGUCG------------UGCGUGGA----CAGCU- -5'
26646 3' -57.1 NC_005808.1 + 9186 0.66 0.509385
Target:  5'- uGGCGCCGUCG--ACGUugGCCUGcUCGGc -3'
miRNA:   3'- cUCGUGGCAGUcgUGCG--UGGAC-AGCU- -5'
26646 3' -57.1 NC_005808.1 + 12617 0.67 0.467894
Target:  5'- uGGCGCCGacgcgcUCGGCAuCGCugCUGcCGu -3'
miRNA:   3'- cUCGUGGC------AGUCGU-GCGugGACaGCu -5'
26646 3' -57.1 NC_005808.1 + 13289 0.66 0.541488
Target:  5'- cAGCGCCGauugCAGCGCGCcgggGCCggcGUUGu -3'
miRNA:   3'- cUCGUGGCa---GUCGUGCG----UGGa--CAGCu -5'
26646 3' -57.1 NC_005808.1 + 13550 0.66 0.530706
Target:  5'- aGGCGCgGUCGGCAuCGC-CCagGUCa- -3'
miRNA:   3'- cUCGUGgCAGUCGU-GCGuGGa-CAGcu -5'
26646 3' -57.1 NC_005808.1 + 14486 0.68 0.418603
Target:  5'- cGGUGCCG-CAG-GCGCGCCUGgCGAc -3'
miRNA:   3'- cUCGUGGCaGUCgUGCGUGGACaGCU- -5'
26646 3' -57.1 NC_005808.1 + 15570 0.71 0.256273
Target:  5'- uGGCGCCGUCAGUgacgACGCGCUg--CGGa -3'
miRNA:   3'- cUCGUGGCAGUCG----UGCGUGGacaGCU- -5'
26646 3' -57.1 NC_005808.1 + 16943 0.7 0.314208
Target:  5'- cGGCGCCGUcCAGCAgCGUGCCgcGUUGGu -3'
miRNA:   3'- cUCGUGGCA-GUCGU-GCGUGGa-CAGCU- -5'
26646 3' -57.1 NC_005808.1 + 17451 0.66 0.530706
Target:  5'- aAGCGgugCGUCGGCGCGaugcaggcaUACCUGUCGc -3'
miRNA:   3'- cUCGUg--GCAGUCGUGC---------GUGGACAGCu -5'
26646 3' -57.1 NC_005808.1 + 18117 0.71 0.276907
Target:  5'- -cGCGCCGUcCGGUACGUcgaACUUGUCGc -3'
miRNA:   3'- cuCGUGGCA-GUCGUGCG---UGGACAGCu -5'
26646 3' -57.1 NC_005808.1 + 20748 0.7 0.314208
Target:  5'- uGGCGCCGUagaGGCGCuGCGCCgcgcUCGAc -3'
miRNA:   3'- cUCGUGGCAg--UCGUG-CGUGGac--AGCU- -5'
26646 3' -57.1 NC_005808.1 + 22070 0.66 0.552342
Target:  5'- cGGGuCGCgGUCGGCGCGCGgC--UCGAu -3'
miRNA:   3'- -CUC-GUGgCAGUCGUGCGUgGacAGCU- -5'
26646 3' -57.1 NC_005808.1 + 22531 0.75 0.137238
Target:  5'- cGAGCACgCG-CAGCGCGCGCgugccggugUUGUCGAg -3'
miRNA:   3'- -CUCGUG-GCaGUCGUGCGUG---------GACAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.