miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 5' -53.1 NC_005808.1 + 6481 0.71 0.499996
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26646 5' -53.1 NC_005808.1 + 15348 0.71 0.478987
Target:  5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3'
miRNA:   3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5'
26646 5' -53.1 NC_005808.1 + 7444 0.72 0.418764
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 3713 0.72 0.415874
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26646 5' -53.1 NC_005808.1 + 23169 0.72 0.438336
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26646 5' -53.1 NC_005808.1 + 23098 0.72 0.418764
Target:  5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3'
miRNA:   3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 5351 0.72 0.448317
Target:  5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3'
miRNA:   3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5'
26646 5' -53.1 NC_005808.1 + 33079 0.72 0.458421
Target:  5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3'
miRNA:   3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5'
26646 5' -53.1 NC_005808.1 + 23611 0.73 0.399732
Target:  5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3'
miRNA:   3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5'
26646 5' -53.1 NC_005808.1 + 19626 0.73 0.390426
Target:  5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3'
miRNA:   3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5'
26646 5' -53.1 NC_005808.1 + 5553 0.73 0.408229
Target:  5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3'
miRNA:   3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5'
26646 5' -53.1 NC_005808.1 + 5377 0.74 0.329366
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26646 5' -53.1 NC_005808.1 + 16437 0.74 0.329367
Target:  5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3'
miRNA:   3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5'
26646 5' -53.1 NC_005808.1 + 8578 0.75 0.305442
Target:  5'- -uUCGCCGGCGACAUCaagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG---CUGU--C-GCACC- -5'
26646 5' -53.1 NC_005808.1 + 11440 0.75 0.282145
Target:  5'- gGUCGCCGauaaggcGCGACAcCGGCAGCuuuucaGUGGc -3'
miRNA:   3'- aCAGCGGU-------UGCUGUaGCUGUCG------CACC- -5'
26646 5' -53.1 NC_005808.1 + 1364 0.76 0.268574
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26646 5' -53.1 NC_005808.1 + 14981 0.76 0.27565
Target:  5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3'
miRNA:   3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5'
26646 5' -53.1 NC_005808.1 + 12498 0.76 0.261646
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26646 5' -53.1 NC_005808.1 + 35017 0.77 0.217165
Target:  5'- cGUCGCCGACGACuUCGugGaCGUGu -3'
miRNA:   3'- aCAGCGGUUGCUGuAGCugUcGCACc -5'
26646 5' -53.1 NC_005808.1 + 14900 0.78 0.194764
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.