Results 61 - 77 of 77 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 9303 | 0.66 | 0.379896 |
Target: 5'- uGACuuccuCGGcgaccUGGCGGCgCA-CGUcGGCGCg -3' miRNA: 3'- -CUGu----GCC-----ACCGCCG-GUcGCAaCCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 34209 | 0.66 | 0.377279 |
Target: 5'- cGACACGuG-GGCGGCgauucucgaagauuCGagcGCGgcGGCGCa -3' miRNA: 3'- -CUGUGC-CaCCGCCG--------------GU---CGCaaCCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 27633 | 0.66 | 0.374673 |
Target: 5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3' miRNA: 3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 28758 | 0.66 | 0.362677 |
Target: 5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3' miRNA: 3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 3738 | 0.66 | 0.362677 |
Target: 5'- cACGcCGGUGGUGGgCA-CGUcGGUGCc -3' miRNA: 3'- cUGU-GCCACCGCCgGUcGCAaCCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 3573 | 0.66 | 0.355108 |
Target: 5'- gGGCugGGcguacaccgauccgcGGCcGCCAGUGUUGGcCGUg -3' miRNA: 3'- -CUGugCCa--------------CCGcCGGUCGCAACC-GCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 27434 | 0.66 | 0.354274 |
Target: 5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3' miRNA: 3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 1710 | 0.67 | 0.329896 |
Target: 5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3' miRNA: 3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 17092 | 0.67 | 0.329896 |
Target: 5'- cGGCGCGGUucuCGGCCGgGCcUUGGgGCu -3' miRNA: 3'- -CUGUGCCAcc-GCCGGU-CGcAACCgCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 8663 | 0.67 | 0.32205 |
Target: 5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3' miRNA: 3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 27836 | 0.67 | 0.306778 |
Target: 5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3' miRNA: 3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 31098 | 0.67 | 0.306778 |
Target: 5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3' miRNA: 3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 12020 | 0.67 | 0.306778 |
Target: 5'- aGCGCGGccgUGGcCGGCgaggucuugccCAGCGUgucgaagucgaUGGCGCc -3' miRNA: 3'- cUGUGCC---ACC-GCCG-----------GUCGCA-----------ACCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 23713 | 0.67 | 0.299352 |
Target: 5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3' miRNA: 3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 4277 | 0.68 | 0.28492 |
Target: 5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3' miRNA: 3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 28662 | 0.68 | 0.28492 |
Target: 5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3' miRNA: 3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5' |
|||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 18395 | 0.8 | 0.038151 |
Target: 5'- uGGCGcCGGUGGCGGCCacgucGGCGaaggUGGCGUu -3' miRNA: 3'- -CUGU-GCCACCGCCGG-----UCGCa---ACCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home