Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2665 | 5' | -66.1 | NC_001491.2 | + | 1832 | 0.66 | 0.460671 |
Target: 5'- cGGCacagccucagGGGCGCAGAGuCCGGGUacagGCgCGc -3' miRNA: 3'- uCCG----------CUCGCGUCUC-GGCCCG----CGgGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 94614 | 0.66 | 0.45198 |
Target: 5'- uGGCGGGCGUAGAcauaCCccagGGGCGacaCCGg -3' miRNA: 3'- uCCGCUCGCGUCUc---GG----CCCGCg--GGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 37231 | 0.66 | 0.44338 |
Target: 5'- gGGGUGAGaCGCgggcugggGGGGCCaggcucucucucGGGCgcggGCCCGUg -3' miRNA: 3'- -UCCGCUC-GCG--------UCUCGG------------CCCG----CGGGCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 51736 | 0.66 | 0.44338 |
Target: 5'- aAGGCGAGCuuaAGGGUgGGGUguugGCCaCGUg -3' miRNA: 3'- -UCCGCUCGcg-UCUCGgCCCG----CGG-GCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 56092 | 0.66 | 0.44338 |
Target: 5'- gGGGaaaGAGUGCAccgcgguGGCCGGGUGCacCCGg -3' miRNA: 3'- -UCCg--CUCGCGUc------UCGGCCCGCG--GGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 2533 | 0.66 | 0.44338 |
Target: 5'- aAGGUGAGCGcCGGGcGCCaGGC-CUCGg -3' miRNA: 3'- -UCCGCUCGC-GUCU-CGGcCCGcGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 35587 | 0.66 | 0.44338 |
Target: 5'- aGGGCGccGCGCAGAGCCaccGcGCGgCCa- -3' miRNA: 3'- -UCCGCu-CGCGUCUCGGc--C-CGCgGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 2943 | 0.66 | 0.434872 |
Target: 5'- gAGGUGGGcCGgGGAGgCGGcCGCCUGa -3' miRNA: 3'- -UCCGCUC-GCgUCUCgGCCcGCGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 68416 | 0.66 | 0.42646 |
Target: 5'- gAGGC--GUGCGGAGCaGGGCcguGUCCGUa -3' miRNA: 3'- -UCCGcuCGCGUCUCGgCCCG---CGGGCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 104973 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 105039 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 105105 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 13585 | 0.67 | 0.369638 |
Target: 5'- aGGGCGAGCuaAGGgaguaagacugccGCCGGGCaggcaaugugcGCCCa- -3' miRNA: 3'- -UCCGCUCGcgUCU-------------CGGCCCG-----------CGGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 28560 | 0.67 | 0.362814 |
Target: 5'- cGGCgGGGCGCAGAacGCCccuGGCcCCCGg -3' miRNA: 3'- uCCG-CUCGCGUCU--CGGc--CCGcGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 134444 | 0.67 | 0.360559 |
Target: 5'- cGGCGGGCGguGcaaaguccgcgcgaGGuCUGGGUGCuuGUg -3' miRNA: 3'- uCCGCUCGCguC--------------UC-GGCCCGCGggCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 12483 | 0.68 | 0.340707 |
Target: 5'- cGGCGGGCgGCGGGcGCCcgcGGGUcCCCGg -3' miRNA: 3'- uCCGCUCG-CGUCU-CGG---CCCGcGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 10109 | 0.68 | 0.33855 |
Target: 5'- gAGGC-AGCggacgcgcuccggaGCGGcGCCGGGCcGCCCGc -3' miRNA: 3'- -UCCGcUCG--------------CGUCuCGGCCCG-CGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 5517 | 0.68 | 0.312773 |
Target: 5'- cAGGuCGGGCGCGGcgGGCUGGGUGaaCCCc- -3' miRNA: 3'- -UCC-GCUCGCGUC--UCGGCCCGC--GGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 35667 | 0.69 | 0.292986 |
Target: 5'- cGGCGcGGCGCuGGGGCCGuGGaGCCCu- -3' miRNA: 3'- uCCGC-UCGCG-UCUCGGC-CCgCGGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 8674 | 0.7 | 0.268143 |
Target: 5'- gGGGCGuucuGCGCcccGCCGuGGCGCCCc- -3' miRNA: 3'- -UCCGCu---CGCGucuCGGC-CCGCGGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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