Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2665 | 5' | -66.1 | NC_001491.2 | + | 2533 | 0.66 | 0.44338 |
Target: 5'- aAGGUGAGCGcCGGGcGCCaGGC-CUCGg -3' miRNA: 3'- -UCCGCUCGC-GUCU-CGGcCCGcGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 56092 | 0.66 | 0.44338 |
Target: 5'- gGGGaaaGAGUGCAccgcgguGGCCGGGUGCacCCGg -3' miRNA: 3'- -UCCg--CUCGCGUc------UCGGCCCGCG--GGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 51736 | 0.66 | 0.44338 |
Target: 5'- aAGGCGAGCuuaAGGGUgGGGUguugGCCaCGUg -3' miRNA: 3'- -UCCGCUCGcg-UCUCGgCCCG----CGG-GCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 37231 | 0.66 | 0.44338 |
Target: 5'- gGGGUGAGaCGCgggcugggGGGGCCaggcucucucucGGGCgcggGCCCGUg -3' miRNA: 3'- -UCCGCUC-GCG--------UCUCGG------------CCCG----CGGGCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 2943 | 0.66 | 0.434872 |
Target: 5'- gAGGUGGGcCGgGGAGgCGGcCGCCUGa -3' miRNA: 3'- -UCCGCUC-GCgUCUCgGCCcGCGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 68416 | 0.66 | 0.42646 |
Target: 5'- gAGGC--GUGCGGAGCaGGGCcguGUCCGUa -3' miRNA: 3'- -UCCGcuCGCGUCUCGgCCCG---CGGGCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 105105 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 105039 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 104973 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 1832 | 0.66 | 0.460671 |
Target: 5'- cGGCacagccucagGGGCGCAGAGuCCGGGUacagGCgCGc -3' miRNA: 3'- uCCG----------CUCGCGUCUC-GGCCCG----CGgGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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