Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2665 | 5' | -66.1 | NC_001491.2 | + | 84471 | 1.06 | 0.000607 |
Target: 5'- cAGGCGAGCGCAGAGCCGGGCGCCCGUc -3' miRNA: 3'- -UCCGCUCGCGUCUCGGCCCGCGGGCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 1973 | 0.79 | 0.056586 |
Target: 5'- cAGGCGAccCGCGGAGUCaGGGCGCCCGc -3' miRNA: 3'- -UCCGCUc-GCGUCUCGG-CCCGCGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 5309 | 0.74 | 0.132475 |
Target: 5'- cGGCGAGCccCGGAGCCGGGCuggguGCCgGg -3' miRNA: 3'- uCCGCUCGc-GUCUCGGCCCG-----CGGgCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 22384 | 0.72 | 0.172747 |
Target: 5'- cGGGUGGGCGUucGGGCUGGGUGUuuGg -3' miRNA: 3'- -UCCGCUCGCGu-CUCGGCCCGCGggCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 67288 | 0.72 | 0.172747 |
Target: 5'- cGGCGAGCGCcguccugcgguuGGGGCaCGGGCuGCUgGUg -3' miRNA: 3'- uCCGCUCGCG------------UCUCG-GCCCG-CGGgCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 9998 | 0.72 | 0.189922 |
Target: 5'- gGGGCGGGCGCGGA--CGGGCuauaCCCGa -3' miRNA: 3'- -UCCGCUCGCGUCUcgGCCCGc---GGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 135400 | 0.7 | 0.234105 |
Target: 5'- gAGGaaaGAGCGgGGucGCCGGGUGCgCGUc -3' miRNA: 3'- -UCCg--CUCGCgUCu-CGGCCCGCGgGCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 2852 | 0.7 | 0.238969 |
Target: 5'- gGGGCucgGAGCGCcGcuuGCCgcucuugccccugGGGCGCCCGUg -3' miRNA: 3'- -UCCG---CUCGCGuCu--CGG-------------CCCGCGGGCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 5755 | 0.7 | 0.245029 |
Target: 5'- cGGCGGGCGCucGGAcGaCGGGCGCCg-- -3' miRNA: 3'- uCCGCUCGCG--UCU-CgGCCCGCGGgca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 4801 | 0.7 | 0.261029 |
Target: 5'- gGGaGCGGGCGCcgaagcuGGAGCCGGagcggguGCGCCgGg -3' miRNA: 3'- -UC-CGCUCGCG-------UCUCGGCC-------CGCGGgCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 8674 | 0.7 | 0.268143 |
Target: 5'- gGGGCGuucuGCGCcccGCCGuGGCGCCCc- -3' miRNA: 3'- -UCCGCu---CGCGucuCGGC-CCGCGGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 35667 | 0.69 | 0.292986 |
Target: 5'- cGGCGcGGCGCuGGGGCCGuGGaGCCCu- -3' miRNA: 3'- uCCGC-UCGCG-UCUCGGC-CCgCGGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 5517 | 0.68 | 0.312773 |
Target: 5'- cAGGuCGGGCGCGGcgGGCUGGGUGaaCCCc- -3' miRNA: 3'- -UCC-GCUCGCGUC--UCGGCCCGC--GGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 10109 | 0.68 | 0.33855 |
Target: 5'- gAGGC-AGCggacgcgcuccggaGCGGcGCCGGGCcGCCCGc -3' miRNA: 3'- -UCCGcUCG--------------CGUCuCGGCCCG-CGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 12483 | 0.68 | 0.340707 |
Target: 5'- cGGCGGGCgGCGGGcGCCcgcGGGUcCCCGg -3' miRNA: 3'- uCCGCUCG-CGUCU-CGG---CCCGcGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 134444 | 0.67 | 0.360559 |
Target: 5'- cGGCGGGCGguGcaaaguccgcgcgaGGuCUGGGUGCuuGUg -3' miRNA: 3'- uCCGCUCGCguC--------------UC-GGCCCGCGggCA- -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 28560 | 0.67 | 0.362814 |
Target: 5'- cGGCgGGGCGCAGAacGCCccuGGCcCCCGg -3' miRNA: 3'- uCCG-CUCGCGUCU--CGGc--CCGcGGGCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 13585 | 0.67 | 0.369638 |
Target: 5'- aGGGCGAGCuaAGGgaguaagacugccGCCGGGCaggcaaugugcGCCCa- -3' miRNA: 3'- -UCCGCUCGcgUCU-------------CGGCCCG-----------CGGGca -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 105105 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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2665 | 5' | -66.1 | NC_001491.2 | + | 104973 | 0.66 | 0.418145 |
Target: 5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3' miRNA: 3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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