miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2665 5' -66.1 NC_001491.2 + 51736 0.66 0.44338
Target:  5'- aAGGCGAGCuuaAGGGUgGGGUguugGCCaCGUg -3'
miRNA:   3'- -UCCGCUCGcg-UCUCGgCCCG----CGG-GCA- -5'
2665 5' -66.1 NC_001491.2 + 37231 0.66 0.44338
Target:  5'- gGGGUGAGaCGCgggcugggGGGGCCaggcucucucucGGGCgcggGCCCGUg -3'
miRNA:   3'- -UCCGCUC-GCG--------UCUCGG------------CCCG----CGGGCA- -5'
2665 5' -66.1 NC_001491.2 + 2943 0.66 0.434872
Target:  5'- gAGGUGGGcCGgGGAGgCGGcCGCCUGa -3'
miRNA:   3'- -UCCGCUC-GCgUCUCgGCCcGCGGGCa -5'
2665 5' -66.1 NC_001491.2 + 68416 0.66 0.42646
Target:  5'- gAGGC--GUGCGGAGCaGGGCcguGUCCGUa -3'
miRNA:   3'- -UCCGcuCGCGUCUCGgCCCG---CGGGCA- -5'
2665 5' -66.1 NC_001491.2 + 105105 0.66 0.418145
Target:  5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3'
miRNA:   3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5'
2665 5' -66.1 NC_001491.2 + 105039 0.66 0.418145
Target:  5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3'
miRNA:   3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5'
2665 5' -66.1 NC_001491.2 + 104973 0.66 0.418145
Target:  5'- cGGCGGGggccgcCGCAGAuuugGCCGGG-GCCgCGg -3'
miRNA:   3'- uCCGCUC------GCGUCU----CGGCCCgCGG-GCa -5'
2665 5' -66.1 NC_001491.2 + 13585 0.67 0.369638
Target:  5'- aGGGCGAGCuaAGGgaguaagacugccGCCGGGCaggcaaugugcGCCCa- -3'
miRNA:   3'- -UCCGCUCGcgUCU-------------CGGCCCG-----------CGGGca -5'
2665 5' -66.1 NC_001491.2 + 28560 0.67 0.362814
Target:  5'- cGGCgGGGCGCAGAacGCCccuGGCcCCCGg -3'
miRNA:   3'- uCCG-CUCGCGUCU--CGGc--CCGcGGGCa -5'
2665 5' -66.1 NC_001491.2 + 84471 1.06 0.000607
Target:  5'- cAGGCGAGCGCAGAGCCGGGCGCCCGUc -3'
miRNA:   3'- -UCCGCUCGCGUCUCGGCCCGCGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.