Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26650 | 3' | -59.9 | NC_005808.1 | + | 4859 | 0.67 | 0.3639 |
Target: 5'- aGGUUGCccgGUCAGGuCGUugccCAGCGCGgCGa -3' miRNA: 3'- -CCGACG---CAGUCCcGCA----GUCGCGCaGC- -5' |
|||||||
26650 | 3' | -59.9 | NC_005808.1 | + | 1631 | 0.66 | 0.435779 |
Target: 5'- gGGC-GUGUCguacccaucGGGGUagGUCuGCGCGUCc -3' miRNA: 3'- -CCGaCGCAG---------UCCCG--CAGuCGCGCAGc -5' |
|||||||
26650 | 3' | -59.9 | NC_005808.1 | + | 874 | 0.68 | 0.293377 |
Target: 5'- cGGCaaggGCu---GGGCG-CGGCGCGUCGc -3' miRNA: 3'- -CCGa---CGcaguCCCGCaGUCGCGCAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home