Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26651 | 3' | -55.3 | NC_005808.1 | + | 24144 | 0.69 | 0.443085 |
Target: 5'- gGCUGCG--CGCcuGGCCcagcgccUCGACGGCu -3' miRNA: 3'- aCGACGCaaGCGu-CUGGu------AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 26169 | 0.7 | 0.40444 |
Target: 5'- cUGCgaUGCGgUCGCAGAUUucgguggCGAUGGCu -3' miRNA: 3'- -ACG--ACGCaAGCGUCUGGua-----GCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 22413 | 0.71 | 0.359239 |
Target: 5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3' miRNA: 3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 14825 | 0.74 | 0.2393 |
Target: 5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3' miRNA: 3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 40708 | 0.71 | 0.333864 |
Target: 5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3' miRNA: 3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 29057 | 0.68 | 0.536883 |
Target: 5'- gGCgGC--UCGUAGGCCAUCaGCGGg -3' miRNA: 3'- aCGaCGcaAGCGUCUGGUAGcUGCCg -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 14350 | 0.68 | 0.536883 |
Target: 5'- cUGCUG-GUUCGCGGuguCCuggaaggCGGgGGCa -3' miRNA: 3'- -ACGACgCAAGCGUCu--GGua-----GCUgCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 41454 | 0.66 | 0.658993 |
Target: 5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3' miRNA: 3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 8559 | 0.66 | 0.655642 |
Target: 5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3' miRNA: 3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 8878 | 0.66 | 0.641103 |
Target: 5'- cGaaGCGggCGCGGGCauCAuugugaauggcgcuaUCGGCGGCg -3' miRNA: 3'- aCgaCGCaaGCGUCUG--GU---------------AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 8187 | 0.66 | 0.641103 |
Target: 5'- aUGCUGCcggcgauuucaucgCGCAcGGCCucguagucgcgcugGUCGGCGGCc -3' miRNA: 3'- -ACGACGcaa-----------GCGU-CUGG--------------UAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 37191 | 0.66 | 0.62543 |
Target: 5'- gUGgaGCGUaCGCAGaagguGCUcgCGGCGcGCa -3' miRNA: 3'- -ACgaCGCAaGCGUC-----UGGuaGCUGC-CG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 38399 | 0.67 | 0.603067 |
Target: 5'- cGCgacGUGcUCGCGGccaacaugcccGCCAUCGagGCGGCc -3' miRNA: 3'- aCGa--CGCaAGCGUC-----------UGGUAGC--UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 5276 | 0.67 | 0.59192 |
Target: 5'- gUGUUGaUGUUCGCGGcGuuGUCGgccACGGCg -3' miRNA: 3'- -ACGAC-GCAAGCGUC-UggUAGC---UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 23710 | 0.67 | 0.558724 |
Target: 5'- gGUaGCGcccaggUCGCGGGCCAgugccUCGGUGGCg -3' miRNA: 3'- aCGaCGCa-----AGCGUCUGGU-----AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 36111 | 0.67 | 0.558724 |
Target: 5'- aGC-GCGUgaaUGCGGGCCugcgCGGCGuGCa -3' miRNA: 3'- aCGaCGCAa--GCGUCUGGua--GCUGC-CG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 35732 | 0.67 | 0.547769 |
Target: 5'- cGUUcUGUUCGaggccaAGACCGUCaACGGCg -3' miRNA: 3'- aCGAcGCAAGCg-----UCUGGUAGcUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 2518 | 0.67 | 0.547769 |
Target: 5'- gGCgggGCuucgGUUCGUAGACCAggaauUCG-CGGUa -3' miRNA: 3'- aCGa--CG----CAAGCGUCUGGU-----AGCuGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 1680 | 0.68 | 0.541229 |
Target: 5'- aUGCUGCcg-CGCAGguagucgagaaauucGCCGUgGGcCGGCg -3' miRNA: 3'- -ACGACGcaaGCGUC---------------UGGUAgCU-GCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 15590 | 0.68 | 0.536883 |
Target: 5'- cGCUGCGgaUGCAccgcGCCAUCGGCcaGGa -3' miRNA: 3'- aCGACGCaaGCGUc---UGGUAGCUG--CCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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