miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26652 5' -57.7 NC_005808.1 + 13205 0.68 0.379822
Target:  5'- cGAGGCGC-AGUUGCaGAacgacccacgccUGGCCGgCa -3'
miRNA:   3'- aCUUCGCGuUCGACGaCU------------GCCGGCgG- -5'
26652 5' -57.7 NC_005808.1 + 4807 0.68 0.37092
Target:  5'- cUGgcGCuGCGGGaUUGCUGGCcggcgacaGGUCGCCg -3'
miRNA:   3'- -ACuuCG-CGUUC-GACGACUG--------CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 23716 0.68 0.37092
Target:  5'- --uGGUGCA-GUUGCUG-CcGCCGCCg -3'
miRNA:   3'- acuUCGCGUuCGACGACuGcCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 16515 0.68 0.365648
Target:  5'- cGAGGUGCcGGUgGuCUGGCcgauauagccguacaGGCCGCCu -3'
miRNA:   3'- aCUUCGCGuUCGaC-GACUG---------------CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 28628 0.68 0.362163
Target:  5'- cGAcguGCGCGccGCgaugGCcGGCGGCCGCa -3'
miRNA:   3'- aCUu--CGCGUu-CGa---CGaCUGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 9729 0.68 0.35355
Target:  5'- cGAAGcCGCGGGCgaacUGCUcgugGugGGCgCGCUu -3'
miRNA:   3'- aCUUC-GCGUUCG----ACGA----CugCCG-GCGG- -5'
26652 5' -57.7 NC_005808.1 + 26870 0.68 0.35355
Target:  5'- aUGGucGGCGgAAGCaagGCUGACGGCaGUg -3'
miRNA:   3'- -ACU--UCGCgUUCGa--CGACUGCCGgCGg -5'
26652 5' -57.7 NC_005808.1 + 2007 0.68 0.35355
Target:  5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3'
miRNA:   3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5'
26652 5' -57.7 NC_005808.1 + 37191 0.68 0.35355
Target:  5'- gUGGAGCGUAcgcagaAGgUGCUcGCGGCgCGCa -3'
miRNA:   3'- -ACUUCGCGU------UCgACGAcUGCCG-GCGg -5'
26652 5' -57.7 NC_005808.1 + 37490 0.68 0.345082
Target:  5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3'
miRNA:   3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 8115 0.68 0.345082
Target:  5'- gGgcGCGCGucauggacGGCgGCaagGACGGCgGCCc -3'
miRNA:   3'- aCuuCGCGU--------UCGaCGa--CUGCCGgCGG- -5'
26652 5' -57.7 NC_005808.1 + 27524 0.68 0.345082
Target:  5'- cGcGGCGCGcuggcauaccAGCgccaggGCcuGCGGCCGCCg -3'
miRNA:   3'- aCuUCGCGU----------UCGa-----CGacUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 35825 0.68 0.345082
Target:  5'- cGGAGaaaGCAGGCUugcccucgccGUUGACGGUCuugGCCu -3'
miRNA:   3'- aCUUCg--CGUUCGA----------CGACUGCCGG---CGG- -5'
26652 5' -57.7 NC_005808.1 + 12202 0.69 0.336761
Target:  5'- gGAAGCGC-AGC-GCgUGGCGcGUCGCg -3'
miRNA:   3'- aCUUCGCGuUCGaCG-ACUGC-CGGCGg -5'
26652 5' -57.7 NC_005808.1 + 33992 0.69 0.336761
Target:  5'- ---uGUGCAgcGGCUGCUG-CG-CCGCCc -3'
miRNA:   3'- acuuCGCGU--UCGACGACuGCcGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 28527 0.69 0.334294
Target:  5'- --cGGCGCu-GCuUGUUGaacggcacgaccuuGCGGCCGCCg -3'
miRNA:   3'- acuUCGCGuuCG-ACGAC--------------UGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 41460 0.69 0.327779
Target:  5'- -cGAGCGCAAacggccGCUGCUcaugaucGACGGCaaGCCu -3'
miRNA:   3'- acUUCGCGUU------CGACGA-------CUGCCGg-CGG- -5'
26652 5' -57.7 NC_005808.1 + 11133 0.69 0.320562
Target:  5'- ---cGUGCGAGCaguucggccUGCUGcugGGCCGCCu -3'
miRNA:   3'- acuuCGCGUUCG---------ACGACug-CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 41605 0.69 0.320562
Target:  5'- aGuGGCGCGGGCagcggGCUGACGGUgaaggGCUg -3'
miRNA:   3'- aCuUCGCGUUCGa----CGACUGCCGg----CGG- -5'
26652 5' -57.7 NC_005808.1 + 14900 0.69 0.320562
Target:  5'- gGGucuGCGCGGcgaucuGCUGCUGGcCGGCCucaaguGCCg -3'
miRNA:   3'- aCUu--CGCGUU------CGACGACU-GCCGG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.