Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26653 | 3' | -56.4 | NC_005808.1 | + | 28694 | 0.67 | 0.510441 |
Target: 5'- -gCGG-GAACUGgccggccucaUCCGCGCCCGGu-- -3' miRNA: 3'- aaGCCgCUUGAC----------AGGUGCGGGCUucg -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 1355 | 0.67 | 0.49987 |
Target: 5'- gUCGGCGGccuuGCgcaUCCgGCGaCCGAAGCg -3' miRNA: 3'- aAGCCGCU----UGac-AGG-UGCgGGCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 6646 | 0.67 | 0.49987 |
Target: 5'- cUUGGcCGGAgUGUCCGCGCUCauGGUc -3' miRNA: 3'- aAGCC-GCUUgACAGGUGCGGGcuUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 18039 | 0.67 | 0.49987 |
Target: 5'- gUCGGCGGGCUG-CUugGgggccuuaCCGgcGCg -3' miRNA: 3'- aAGCCGCUUGACaGGugCg-------GGCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 26826 | 0.67 | 0.49987 |
Target: 5'- uUUUGGCaGGCUGcgCCGC-CCCGAuggAGCg -3' miRNA: 3'- -AAGCCGcUUGACa-GGUGcGGGCU---UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 32921 | 0.67 | 0.489396 |
Target: 5'- cUCGGCGccGACcGUCUGCGgCCaggCGAAGCc -3' miRNA: 3'- aAGCCGC--UUGaCAGGUGC-GG---GCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 41767 | 0.67 | 0.479026 |
Target: 5'- gUCGGCucGCUGUCUcuGCGCgCGcucAAGCc -3' miRNA: 3'- aAGCCGcuUGACAGG--UGCGgGC---UUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 8529 | 0.68 | 0.462663 |
Target: 5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3' miRNA: 3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 11613 | 0.68 | 0.457609 |
Target: 5'- -cCGGCGGGCaGUCCuaucaggAUGCCCGcucGCa -3' miRNA: 3'- aaGCCGCUUGaCAGG-------UGCGGGCuu-CG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 39843 | 0.68 | 0.448589 |
Target: 5'- gUCGGCagug-GUCggCACGCCCGAgcAGCg -3' miRNA: 3'- aAGCCGcuugaCAG--GUGCGGGCU--UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 37510 | 0.68 | 0.448589 |
Target: 5'- --aGGCGGccgucGCUGcUCACGCCCuuGGCg -3' miRNA: 3'- aagCCGCU-----UGACaGGUGCGGGcuUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 3080 | 0.68 | 0.438683 |
Target: 5'- cUUCGGCGAugagcacuuguGCUGUCU-CGaCCUGAuGCg -3' miRNA: 3'- -AAGCCGCU-----------UGACAGGuGC-GGGCUuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 27977 | 0.68 | 0.438683 |
Target: 5'- cUCGGUGGGCUGggCCAUcaggcuguaGCCgaUGAGGCg -3' miRNA: 3'- aAGCCGCUUGACa-GGUG---------CGG--GCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 32637 | 0.68 | 0.428902 |
Target: 5'- -gCGGUc-GCUGUCCugucgaaguucgGCGCCgCGAAGCu -3' miRNA: 3'- aaGCCGcuUGACAGG------------UGCGG-GCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 11998 | 0.68 | 0.428902 |
Target: 5'- gUCGGU--ACUGUCCA-GCCUGGgcacGGCg -3' miRNA: 3'- aAGCCGcuUGACAGGUgCGGGCU----UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 38038 | 0.68 | 0.419252 |
Target: 5'- gUCGGCGGggauGCUGggCCACGCUgCGucGGCc -3' miRNA: 3'- aAGCCGCU----UGACa-GGUGCGG-GCu-UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 6986 | 0.69 | 0.409735 |
Target: 5'- aUUC-GCGGAagcgcGUCCGCGCCCGAuucGCc -3' miRNA: 3'- -AAGcCGCUUga---CAGGUGCGGGCUu--CG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 13543 | 0.69 | 0.400353 |
Target: 5'- gUCGGCaucGCccagGUcaugcccgacaCCGCGCCCGAGGCc -3' miRNA: 3'- aAGCCGcu-UGa---CA-----------GGUGCGGGCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 7254 | 0.69 | 0.391109 |
Target: 5'- gUCGGCcgcccaggucuuGAACUGcugCUugGCCuCGggGCc -3' miRNA: 3'- aAGCCG------------CUUGACa--GGugCGG-GCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 32869 | 0.69 | 0.382006 |
Target: 5'- gUCGGCGccgaGAUUGU-CGCGCCCGAc-- -3' miRNA: 3'- aAGCCGC----UUGACAgGUGCGGGCUucg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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