miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 37636 0.68 0.561244
Target:  5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3'
miRNA:   3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 25537 0.68 0.550061
Target:  5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3'
miRNA:   3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5'
26653 5' -54.3 NC_005808.1 + 19046 0.68 0.527911
Target:  5'- aGCgGCCGCCGGcGGCGUCGaUCAg--- -3'
miRNA:   3'- -CG-CGGCGGCUaUCGCGGUaAGUguua -5'
26653 5' -54.3 NC_005808.1 + 34877 0.68 0.51696
Target:  5'- -gGCCGCCGAgcguGCGCUgcaGUUCAUc-- -3'
miRNA:   3'- cgCGGCGGCUau--CGCGG---UAAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 7146 0.68 0.550061
Target:  5'- cGCGCCGUgGGUAG-GCCGcggcgUCAUGAa -3'
miRNA:   3'- -CGCGGCGgCUAUCgCGGUa----AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 16825 0.68 0.550061
Target:  5'- aCGUCGCCGGUGGCuaCGccCACGAg -3'
miRNA:   3'- cGCGGCGGCUAUCGcgGUaaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 18523 0.68 0.550061
Target:  5'- aCGCCGCCG---GCGCCGcgaccgUCACGu- -3'
miRNA:   3'- cGCGGCGGCuauCGCGGUa-----AGUGUua -5'
26653 5' -54.3 NC_005808.1 + 26794 0.68 0.550061
Target:  5'- cGCGCUGgCGGUGGC-CCGgcUUUGCAAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCGcGGU--AAGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 1208 0.68 0.538947
Target:  5'- cCGCCGCCG-UAGCGCgAgcuaACGGUu -3'
miRNA:   3'- cGCGGCGGCuAUCGCGgUaag-UGUUA- -5'
26653 5' -54.3 NC_005808.1 + 18453 0.68 0.538947
Target:  5'- -gGCCGCCaccGGCGCCAUcgGCAAg -3'
miRNA:   3'- cgCGGCGGcuaUCGCGGUAagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 23586 0.68 0.527911
Target:  5'- uGCGCCGCCugGAaGGCGCgc-UCGCGGa -3'
miRNA:   3'- -CGCGGCGG--CUaUCGCGguaAGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 38089 0.69 0.49534
Target:  5'- uGCGCucaagCGCCuGUGGCGCCGcgCGCAu- -3'
miRNA:   3'- -CGCG-----GCGGcUAUCGCGGUaaGUGUua -5'
26653 5' -54.3 NC_005808.1 + 12435 0.69 0.5061
Target:  5'- gGCGCUGUCGAUGuCGCCGaccUUCAUg-- -3'
miRNA:   3'- -CGCGGCGGCUAUcGCGGU---AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 14869 0.69 0.47414
Target:  5'- aGCGCCGCCGA-GGUGCagguUUCcaGCGAc -3'
miRNA:   3'- -CGCGGCGGCUaUCGCGgu--AAG--UGUUa -5'
26653 5' -54.3 NC_005808.1 + 1520 0.69 0.47414
Target:  5'- -gGCCGCCGAccGCGCCG-UCAa--- -3'
miRNA:   3'- cgCGGCGGCUauCGCGGUaAGUguua -5'
26653 5' -54.3 NC_005808.1 + 9071 0.69 0.49534
Target:  5'- uGCGCCGCCugcuGGaAGCGCCcccgCGCGGc -3'
miRNA:   3'- -CGCGGCGG----CUaUCGCGGuaa-GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 38087 0.69 0.5061
Target:  5'- gGCGCUGCuCGGU-GCGCCAg--GCGAg -3'
miRNA:   3'- -CGCGGCG-GCUAuCGCGGUaagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 6674 0.69 0.49534
Target:  5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3'
miRNA:   3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 41504 0.69 0.47414
Target:  5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3'
miRNA:   3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5'
26653 5' -54.3 NC_005808.1 + 7298 0.7 0.423256
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.