Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 17002 | 0.67 | 0.62931 |
Target: 5'- aCGCUGCUGGacGGCGCCGUgcccUACGAa -3' miRNA: 3'- cGCGGCGGCUa-UCGCGGUAa---GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 16886 | 0.67 | 0.617899 |
Target: 5'- uGCGCCGCgUGAacuGCGCCGccugggCGCGAc -3' miRNA: 3'- -CGCGGCG-GCUau-CGCGGUaa----GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 4855 | 0.67 | 0.572489 |
Target: 5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3' miRNA: 3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25671 | 0.67 | 0.606501 |
Target: 5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3' miRNA: 3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 41537 | 0.67 | 0.605362 |
Target: 5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3' miRNA: 3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 9291 | 0.67 | 0.583786 |
Target: 5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3' miRNA: 3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33341 | 0.67 | 0.62931 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33581 | 0.67 | 0.62931 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 10408 | 0.67 | 0.606501 |
Target: 5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3' miRNA: 3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33293 | 0.67 | 0.62931 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 3609 | 0.67 | 0.606501 |
Target: 5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3' miRNA: 3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 31535 | 0.67 | 0.606501 |
Target: 5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3' miRNA: 3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 15588 | 0.67 | 0.572489 |
Target: 5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3' miRNA: 3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27596 | 0.66 | 0.65213 |
Target: 5'- gGCGgCGCCaGAUGGCGUgGUcgUCGCc-- -3' miRNA: 3'- -CGCgGCGG-CUAUCGCGgUA--AGUGuua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 17205 | 0.66 | 0.67487 |
Target: 5'- cCGCCGCCGAaggAGCGUugCAggaCGCGGa -3' miRNA: 3'- cGCGGCGGCUa--UCGCG--GUaa-GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 2153 | 0.66 | 0.686181 |
Target: 5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3' miRNA: 3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 39031 | 0.66 | 0.67487 |
Target: 5'- cGCGUCGCUGAaauuuaugcGGCGCgGUUgGCGGg -3' miRNA: 3'- -CGCGGCGGCUa--------UCGCGgUAAgUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 4016 | 0.66 | 0.65213 |
Target: 5'- cGCGCCgGCCaccAGCGUCAUgccgCGCGGg -3' miRNA: 3'- -CGCGG-CGGcuaUCGCGGUAa---GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 35038 | 0.66 | 0.663516 |
Target: 5'- cGUGUCcaaGCCGGUGGCGCCGcagaucgagCACGc- -3' miRNA: 3'- -CGCGG---CGGCUAUCGCGGUaa-------GUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 16070 | 0.66 | 0.663516 |
Target: 5'- -gGCCGCCGcgcgcGGCGCCGUagAUggUc -3' miRNA: 3'- cgCGGCGGCua---UCGCGGUAagUGuuA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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