miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 23764 0.66 0.640724
Target:  5'- gGCGCCaccggGCCGAU-GCGCCGcggcUACGAa -3'
miRNA:   3'- -CGCGG-----CGGCUAuCGCGGUaa--GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 23826 0.66 0.686181
Target:  5'- gGCGCaucgGcCCGGUGGCGCCGgcauggCGCu-- -3'
miRNA:   3'- -CGCGg---C-GGCUAUCGCGGUaa----GUGuua -5'
26653 5' -54.3 NC_005808.1 + 25372 0.66 0.640724
Target:  5'- aGCGCCGgUGGcAGgGCCGgccgCACGAc -3'
miRNA:   3'- -CGCGGCgGCUaUCgCGGUaa--GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 25537 0.68 0.550061
Target:  5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3'
miRNA:   3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5'
26653 5' -54.3 NC_005808.1 + 25671 0.67 0.606501
Target:  5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3'
miRNA:   3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 25829 0.74 0.236307
Target:  5'- cGgGCCGCCGuUGGCGCCggUCAg--- -3'
miRNA:   3'- -CgCGGCGGCuAUCGCGGuaAGUguua -5'
26653 5' -54.3 NC_005808.1 + 26794 0.68 0.550061
Target:  5'- cGCGCUGgCGGUGGC-CCGgcUUUGCAAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCGcGGU--AAGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 27063 0.66 0.640724
Target:  5'- cGCGCCGCUG-UAGCcCCAguucUUGCAGc -3'
miRNA:   3'- -CGCGGCGGCuAUCGcGGUa---AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 27493 0.73 0.292168
Target:  5'- uGCgGCCGCCGGgcgcgguGCGCCAggcgCGCGAc -3'
miRNA:   3'- -CG-CGGCGGCUau-----CGCGGUaa--GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 27596 0.66 0.65213
Target:  5'- gGCGgCGCCaGAUGGCGUgGUcgUCGCc-- -3'
miRNA:   3'- -CGCgGCGG-CUAUCGCGgUA--AGUGuua -5'
26653 5' -54.3 NC_005808.1 + 27646 0.66 0.640724
Target:  5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3'
miRNA:   3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5'
26653 5' -54.3 NC_005808.1 + 27828 0.76 0.195035
Target:  5'- cGCGCUGCCcgcGGUGGCGCCGgcCGCGc- -3'
miRNA:   3'- -CGCGGCGG---CUAUCGCGGUaaGUGUua -5'
26653 5' -54.3 NC_005808.1 + 28606 0.66 0.686181
Target:  5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3'
miRNA:   3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5'
26653 5' -54.3 NC_005808.1 + 31535 0.67 0.606501
Target:  5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3'
miRNA:   3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 33293 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33341 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33389 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33437 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33485 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33533 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.