miRNA display CGI


Results 61 - 74 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 33581 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33671 0.66 0.640724
Target:  5'- cGUGCCGCCagcGGUGGCcguGCCGgaUUCGCc-- -3'
miRNA:   3'- -CGCGGCGG---CUAUCG---CGGU--AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 33978 0.73 0.277296
Target:  5'- uGCGCCGCCcaGGUGuGCGCCg--CGCAGa -3'
miRNA:   3'- -CGCGGCGG--CUAU-CGCGGuaaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 34044 0.66 0.663516
Target:  5'- gGCGUgGCCGGUA-CGCCcUUCGgAAa -3'
miRNA:   3'- -CGCGgCGGCUAUcGCGGuAAGUgUUa -5'
26653 5' -54.3 NC_005808.1 + 34877 0.68 0.51696
Target:  5'- -gGCCGCCGAgcguGCGCUgcaGUUCAUc-- -3'
miRNA:   3'- cgCGGCGGCUau--CGCGG---UAAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 35038 0.66 0.663516
Target:  5'- cGUGUCcaaGCCGGUGGCGCCGcagaucgagCACGc- -3'
miRNA:   3'- -CGCGG---CGGCUAUCGCGGUaa-------GUGUua -5'
26653 5' -54.3 NC_005808.1 + 37636 0.68 0.561244
Target:  5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3'
miRNA:   3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 38087 0.69 0.5061
Target:  5'- gGCGCUGCuCGGU-GCGCCAg--GCGAg -3'
miRNA:   3'- -CGCGGCG-GCUAuCGCGGUaagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 38089 0.69 0.49534
Target:  5'- uGCGCucaagCGCCuGUGGCGCCGcgCGCAu- -3'
miRNA:   3'- -CGCG-----GCGGcUAUCGCGGUaaGUGUua -5'
26653 5' -54.3 NC_005808.1 + 39031 0.66 0.67487
Target:  5'- cGCGUCGCUGAaauuuaugcGGCGCgGUUgGCGGg -3'
miRNA:   3'- -CGCGGCGGCUa--------UCGCGgUAAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 39098 0.66 0.640724
Target:  5'- cGCGCCGCauaaauuucagCGAc-GCGCCGggUCACGu- -3'
miRNA:   3'- -CGCGGCG-----------GCUauCGCGGUa-AGUGUua -5'
26653 5' -54.3 NC_005808.1 + 40553 0.73 0.299834
Target:  5'- cGUGUCGUCGGUAuagauuGCGCCGUUgGCGAg -3'
miRNA:   3'- -CGCGGCGGCUAU------CGCGGUAAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 41504 0.69 0.47414
Target:  5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3'
miRNA:   3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5'
26653 5' -54.3 NC_005808.1 + 41537 0.67 0.605362
Target:  5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3'
miRNA:   3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.