miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 18453 0.68 0.538947
Target:  5'- -gGCCGCCaccGGCGCCAUcgGCAAg -3'
miRNA:   3'- cgCGGCGGcuaUCGCGGUAagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 18384 0.72 0.323763
Target:  5'- -gGCCuuGCCGAUGGCGCCggUgGCGGc -3'
miRNA:   3'- cgCGG--CGGCUAUCGCGGuaAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 17466 0.66 0.683923
Target:  5'- gGCGCCGCUGAaucgaagcgguGCGUCgg-CGCGAUg -3'
miRNA:   3'- -CGCGGCGGCUau---------CGCGGuaaGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 17205 0.66 0.67487
Target:  5'- cCGCCGCCGAaggAGCGUugCAggaCGCGGa -3'
miRNA:   3'- cGCGGCGGCUa--UCGCG--GUaa-GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 17002 0.67 0.62931
Target:  5'- aCGCUGCUGGacGGCGCCGUgcccUACGAa -3'
miRNA:   3'- cGCGGCGGCUa-UCGCGGUAa---GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 16886 0.67 0.617899
Target:  5'- uGCGCCGCgUGAacuGCGCCGccugggCGCGAc -3'
miRNA:   3'- -CGCGGCG-GCUau-CGCGGUaa----GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 16825 0.68 0.550061
Target:  5'- aCGUCGCCGGUGGCuaCGccCACGAg -3'
miRNA:   3'- cGCGGCGGCUAUCGcgGUaaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 16070 0.66 0.663516
Target:  5'- -gGCCGCCGcgcgcGGCGCCGUagAUggUc -3'
miRNA:   3'- cgCGGCGGCua---UCGCGGUAagUGuuA- -5'
26653 5' -54.3 NC_005808.1 + 15767 0.66 0.640724
Target:  5'- uUGCCGCCaAUGGUGCgAcgCACGAc -3'
miRNA:   3'- cGCGGCGGcUAUCGCGgUaaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 15633 0.66 0.663516
Target:  5'- cGCGUCGUCacuGAcGGCGCCAUUgACc-- -3'
miRNA:   3'- -CGCGGCGG---CUaUCGCGGUAAgUGuua -5'
26653 5' -54.3 NC_005808.1 + 15588 0.67 0.572489
Target:  5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3'
miRNA:   3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5'
26653 5' -54.3 NC_005808.1 + 14869 0.69 0.47414
Target:  5'- aGCGCCGCCGA-GGUGCagguUUCcaGCGAc -3'
miRNA:   3'- -CGCGGCGGCUaUCGCGgu--AAG--UGUUa -5'
26653 5' -54.3 NC_005808.1 + 12683 0.71 0.384991
Target:  5'- aGCGauGCCGAgcgcgucGGCGCCAUgCGCAAa -3'
miRNA:   3'- -CGCggCGGCUa------UCGCGGUAaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 12435 0.69 0.5061
Target:  5'- gGCGCUGUCGAUGuCGCCGaccUUCAUg-- -3'
miRNA:   3'- -CGCGGCGGCUAUcGCGGU---AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 11592 0.7 0.413476
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5'
26653 5' -54.3 NC_005808.1 + 10408 0.67 0.606501
Target:  5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3'
miRNA:   3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 9291 0.67 0.583786
Target:  5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3'
miRNA:   3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5'
26653 5' -54.3 NC_005808.1 + 9261 0.71 0.375788
Target:  5'- cGCGCCGCCGAgcaggccaacgUcgacGGCGCCAaguugUCGCu-- -3'
miRNA:   3'- -CGCGGCGGCU-----------A----UCGCGGUa----AGUGuua -5'
26653 5' -54.3 NC_005808.1 + 9071 0.69 0.49534
Target:  5'- uGCGCCGCCugcuGGaAGCGCCcccgCGCGGc -3'
miRNA:   3'- -CGCGGCGG----CUaUCGCGGuaa-GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 8964 1.09 0.000814
Target:  5'- cGCGCCGCCGAUAGCGCCAUUCACAAUg -3'
miRNA:   3'- -CGCGGCGGCUAUCGCGGUAAGUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.