miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 461 0.66 0.663516
Target:  5'- cGUGCUGCUGGUGGgCGCCcUggGCAu- -3'
miRNA:   3'- -CGCGGCGGCUAUC-GCGGuAagUGUua -5'
26653 5' -54.3 NC_005808.1 + 739 0.66 0.686181
Target:  5'- gGCGCCGCCGuaGGCgGCCuggUgGCu-- -3'
miRNA:   3'- -CGCGGCGGCuaUCG-CGGua-AgUGuua -5'
26653 5' -54.3 NC_005808.1 + 28606 0.66 0.686181
Target:  5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3'
miRNA:   3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5'
26653 5' -54.3 NC_005808.1 + 289 0.74 0.263035
Target:  5'- cGCGCCaauGCCGAgguGCGCCAgUUCGCcGUg -3'
miRNA:   3'- -CGCGG---CGGCUau-CGCGGU-AAGUGuUA- -5'
26653 5' -54.3 NC_005808.1 + 23158 0.75 0.206139
Target:  5'- gGCGCCGCCGuUGGCGUCGgg-GCGAg -3'
miRNA:   3'- -CGCGGCGGCuAUCGCGGUaagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 8964 1.09 0.000814
Target:  5'- cGCGCCGCCGAUAGCGCCAUUCACAAUg -3'
miRNA:   3'- -CGCGGCGGCUAUCGCGGUAAGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 9071 0.69 0.49534
Target:  5'- uGCGCCGCCugcuGGaAGCGCCcccgCGCGGc -3'
miRNA:   3'- -CGCGGCGG----CUaUCGCGGuaa-GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 33293 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 16070 0.66 0.663516
Target:  5'- -gGCCGCCGcgcgcGGCGCCGUagAUggUc -3'
miRNA:   3'- cgCGGCGGCua---UCGCGGUAagUGuuA- -5'
26653 5' -54.3 NC_005808.1 + 18384 0.72 0.323763
Target:  5'- -gGCCuuGCCGAUGGCGCCggUgGCGGc -3'
miRNA:   3'- cgCGG--CGGCUAUCGCGGuaAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 35038 0.66 0.663516
Target:  5'- cGUGUCcaaGCCGGUGGCGCCGcagaucgagCACGc- -3'
miRNA:   3'- -CGCGG---CGGCUAUCGCGGUaa-------GUGUua -5'
26653 5' -54.3 NC_005808.1 + 17205 0.66 0.67487
Target:  5'- cCGCCGCCGAaggAGCGUugCAggaCGCGGa -3'
miRNA:   3'- cGCGGCGGCUa--UCGCG--GUaa-GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 11592 0.7 0.413476
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5'
26653 5' -54.3 NC_005808.1 + 7298 0.7 0.423256
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5'
26653 5' -54.3 NC_005808.1 + 2153 0.66 0.686181
Target:  5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3'
miRNA:   3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 39031 0.66 0.67487
Target:  5'- cGCGUCGCUGAaauuuaugcGGCGCgGUUgGCGGg -3'
miRNA:   3'- -CGCGGCGGCUa--------UCGCGgUAAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 10408 0.67 0.606501
Target:  5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3'
miRNA:   3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 34877 0.68 0.51696
Target:  5'- -gGCCGCCGAgcguGCGCUgcaGUUCAUc-- -3'
miRNA:   3'- cgCGGCGGCUau--CGCGG---UAAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 19046 0.68 0.527911
Target:  5'- aGCgGCCGCCGGcGGCGUCGaUCAg--- -3'
miRNA:   3'- -CG-CGGCGGCUaUCGCGGUaAGUguua -5'
26653 5' -54.3 NC_005808.1 + 25537 0.68 0.550061
Target:  5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3'
miRNA:   3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.