Results 21 - 40 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 7298 | 0.7 | 0.423256 |
Target: 5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3' miRNA: 3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 6674 | 0.69 | 0.49534 |
Target: 5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3' miRNA: 3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 38089 | 0.69 | 0.49534 |
Target: 5'- uGCGCucaagCGCCuGUGGCGCCGcgCGCAu- -3' miRNA: 3'- -CGCG-----GCGGcUAUCGCGGUaaGUGUua -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 12435 | 0.69 | 0.5061 |
Target: 5'- gGCGCUGUCGAUGuCGCCGaccUUCAUg-- -3' miRNA: 3'- -CGCGGCGGCUAUcGCGGU---AAGUGuua -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 34877 | 0.68 | 0.51696 |
Target: 5'- -gGCCGCCGAgcguGCGCUgcaGUUCAUc-- -3' miRNA: 3'- cgCGGCGGCUau--CGCGG---UAAGUGuua -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 19046 | 0.68 | 0.527911 |
Target: 5'- aGCgGCCGCCGGcGGCGUCGaUCAg--- -3' miRNA: 3'- -CG-CGGCGGCUaUCGCGGUaAGUguua -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 28606 | 0.66 | 0.686181 |
Target: 5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3' miRNA: 3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 23586 | 0.68 | 0.527911 |
Target: 5'- uGCGCCGCCugGAaGGCGCgc-UCGCGGa -3' miRNA: 3'- -CGCGGCGG--CUaUCGCGguaAGUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 38087 | 0.69 | 0.5061 |
Target: 5'- gGCGCUGCuCGGU-GCGCCAg--GCGAg -3' miRNA: 3'- -CGCGGCG-GCUAuCGCGGUaagUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 9071 | 0.69 | 0.49534 |
Target: 5'- uGCGCCGCCugcuGGaAGCGCCcccgCGCGGc -3' miRNA: 3'- -CGCGGCGG----CUaUCGCGGuaa-GUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 1520 | 0.69 | 0.47414 |
Target: 5'- -gGCCGCCGAccGCGCCG-UCAa--- -3' miRNA: 3'- cgCGGCGGCUauCGCGGUaAGUguua -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 14869 | 0.69 | 0.47414 |
Target: 5'- aGCGCCGCCGA-GGUGCagguUUCcaGCGAc -3' miRNA: 3'- -CGCGGCGGCUaUCGCGgu--AAG--UGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 41504 | 0.69 | 0.47414 |
Target: 5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3' miRNA: 3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 12683 | 0.71 | 0.384991 |
Target: 5'- aGCGauGCCGAgcgcgucGGCGCCAUgCGCAAa -3' miRNA: 3'- -CGCggCGGCUa------UCGCGGUAaGUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 9261 | 0.71 | 0.375788 |
Target: 5'- cGCGCCGCCGAgcaggccaacgUcgacGGCGCCAaguugUCGCu-- -3' miRNA: 3'- -CGCGGCGGCU-----------A----UCGCGGUa----AGUGuua -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 40553 | 0.73 | 0.299834 |
Target: 5'- cGUGUCGUCGGUAuagauuGCGCCGUUgGCGAg -3' miRNA: 3'- -CGCGGCGGCUAU------CGCGGUAAgUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 27493 | 0.73 | 0.292168 |
Target: 5'- uGCgGCCGCCGGgcgcgguGCGCCAggcgCGCGAc -3' miRNA: 3'- -CG-CGGCGGCUau-----CGCGGUaa--GUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 33978 | 0.73 | 0.277296 |
Target: 5'- uGCGCCGCCcaGGUGuGCGCCg--CGCAGa -3' miRNA: 3'- -CGCGGCGG--CUAU-CGCGGuaaGUGUUa -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 289 | 0.74 | 0.263035 |
Target: 5'- cGCGCCaauGCCGAgguGCGCCAgUUCGCcGUg -3' miRNA: 3'- -CGCGG---CGGCUau-CGCGGU-AAGUGuUA- -5' |
|||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 23158 | 0.75 | 0.206139 |
Target: 5'- gGCGCCGCCGuUGGCGUCGgg-GCGAg -3' miRNA: 3'- -CGCGGCGGCuAUCGCGGUaagUGUUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home