miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26654 5' -52.6 NC_005808.1 + 15504 0.66 0.719762
Target:  5'- cGCGucaagaacaucaACAaGCuGUGGUUGCGC-GUGCAu -3'
miRNA:   3'- -CGC------------UGUaCGuCACCGACGUGuUACGU- -5'
26654 5' -52.6 NC_005808.1 + 27955 0.66 0.719762
Target:  5'- cGCGACGUGCuG-GGCgaGCACGccaagaugGCGa -3'
miRNA:   3'- -CGCUGUACGuCaCCGa-CGUGUua------CGU- -5'
26654 5' -52.6 NC_005808.1 + 39048 0.67 0.708458
Target:  5'- uGCGGC--GCGGuUGGCgggacUGCGCGGUGUg -3'
miRNA:   3'- -CGCUGuaCGUC-ACCG-----ACGUGUUACGu -5'
26654 5' -52.6 NC_005808.1 + 2233 0.67 0.708458
Target:  5'- cGCGcaGCAggcgGCGcGUGGCcGCGCAAUGa- -3'
miRNA:   3'- -CGC--UGUa---CGU-CACCGaCGUGUUACgu -5'
26654 5' -52.6 NC_005808.1 + 27537 0.67 0.685614
Target:  5'- cGCGugGUGC-GUGcGCgGCGCGcugGCAu -3'
miRNA:   3'- -CGCugUACGuCAC-CGaCGUGUua-CGU- -5'
26654 5' -52.6 NC_005808.1 + 33576 0.67 0.6741
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 33336 0.67 0.6741
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 33432 0.67 0.6741
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 33528 0.67 0.6741
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 33384 0.67 0.6741
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 33480 0.67 0.6741
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 33288 0.67 0.6741
Target:  5'- cGCGAUAgccaGCGGUGGCcgUGcCGCGAUaGCc -3'
miRNA:   3'- -CGCUGUa---CGUCACCG--AC-GUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 38219 0.67 0.662542
Target:  5'- cGCGACG-GCGccUGGCUGCGCAuccGCc -3'
miRNA:   3'- -CGCUGUaCGUc-ACCGACGUGUua-CGu -5'
26654 5' -52.6 NC_005808.1 + 25597 0.68 0.650952
Target:  5'- uGCGGCccagGCAGUGGCaaccacggcgGCGCGGUcGCc -3'
miRNA:   3'- -CGCUGua--CGUCACCGa---------CGUGUUA-CGu -5'
26654 5' -52.6 NC_005808.1 + 3533 0.68 0.650952
Target:  5'- uCGACGUGUAGUGccaGCUGCcgccgaACAGcGCAg -3'
miRNA:   3'- cGCUGUACGUCAC---CGACG------UGUUaCGU- -5'
26654 5' -52.6 NC_005808.1 + 26139 0.68 0.650952
Target:  5'- cGCGGCAgauuuggcGCAGcGGCUcGCcgucuGCGAUGCGg -3'
miRNA:   3'- -CGCUGUa-------CGUCaCCGA-CG-----UGUUACGU- -5'
26654 5' -52.6 NC_005808.1 + 25992 0.68 0.627727
Target:  5'- gGCGACAUGCuG-GGCcacCGCAAgcUGCAa -3'
miRNA:   3'- -CGCUGUACGuCaCCGac-GUGUU--ACGU- -5'
26654 5' -52.6 NC_005808.1 + 21189 0.68 0.616115
Target:  5'- cGCGGCcUGCuGcUGGuCUGCGCGuUGCu -3'
miRNA:   3'- -CGCUGuACGuC-ACC-GACGUGUuACGu -5'
26654 5' -52.6 NC_005808.1 + 7123 0.68 0.604519
Target:  5'- uGCGugAUGCccAGcGGUUGCAUAAggGCGc -3'
miRNA:   3'- -CGCugUACG--UCaCCGACGUGUUa-CGU- -5'
26654 5' -52.6 NC_005808.1 + 37029 0.7 0.513521
Target:  5'- cGCGGCGcagcuUGCuGGUGGCUGgACGcgguuUGCAg -3'
miRNA:   3'- -CGCUGU-----ACG-UCACCGACgUGUu----ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.