miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26655 3' -56.9 NC_005808.1 + 38012 0.67 0.460471
Target:  5'- gAGCAGuuccUCGC-CUGGCgcacCGAGCAGcgccucGGCg -3'
miRNA:   3'- -UCGUCu---AGCGuGACCG----GCUUGUC------CCG- -5'
26655 3' -56.9 NC_005808.1 + 8386 0.67 0.460471
Target:  5'- cGGCc--UCGCGCUGGCugcguagccaguCGGcCAGGGCc -3'
miRNA:   3'- -UCGucuAGCGUGACCG------------GCUuGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 26476 0.67 0.457445
Target:  5'- gGGCAuGAguuacgcCGUGCUGGCCGAGaaguucgagcagucCAaGGGCg -3'
miRNA:   3'- -UCGU-CUa------GCGUGACCGGCUU--------------GU-CCCG- -5'
26655 3' -56.9 NC_005808.1 + 2038 0.67 0.450427
Target:  5'- uGGCAGGUgGCGC---CCGuaucGCGGGGCa -3'
miRNA:   3'- -UCGUCUAgCGUGaccGGCu---UGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 18243 0.67 0.449429
Target:  5'- cAGCAuggaaguGAUCGCACUGa---AACAGGGCu -3'
miRNA:   3'- -UCGU-------CUAGCGUGACcggcUUGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 8714 0.68 0.440504
Target:  5'- gGGuCGGAugUCGCGCaccuUGaGCCGGGacacCAGGGCg -3'
miRNA:   3'- -UC-GUCU--AGCGUG----AC-CGGCUU----GUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 5810 0.68 0.440504
Target:  5'- gGGUAGAagcCGCcCUGGuuGGuCAGGGUu -3'
miRNA:   3'- -UCGUCUa--GCGuGACCggCUuGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 38237 0.68 0.411504
Target:  5'- cGUAGGUCGUACccGGCCGcAACAccgccaGGCg -3'
miRNA:   3'- uCGUCUAGCGUGa-CCGGC-UUGUc-----CCG- -5'
26655 3' -56.9 NC_005808.1 + 9401 0.68 0.411504
Target:  5'- uGCAuGUCGCGCaGGCCGc---GGGCu -3'
miRNA:   3'- uCGUcUAGCGUGaCCGGCuuguCCCG- -5'
26655 3' -56.9 NC_005808.1 + 32616 0.68 0.407727
Target:  5'- gAGCGGcAUCGCcggcggcagcaucCUGGCCGGcaucaccagccuGCAcGGGCg -3'
miRNA:   3'- -UCGUC-UAGCGu------------GACCGGCU------------UGU-CCCG- -5'
26655 3' -56.9 NC_005808.1 + 22908 0.68 0.402103
Target:  5'- cGCAGcgCGCGCUgucGGCUGucgGCAGcgcGGCg -3'
miRNA:   3'- uCGUCuaGCGUGA---CCGGCu--UGUC---CCG- -5'
26655 3' -56.9 NC_005808.1 + 1612 0.68 0.401171
Target:  5'- gAGCGGuUCG-GCUuuaccaaGGCCGAACugcuGGGCg -3'
miRNA:   3'- -UCGUCuAGCgUGA-------CCGGCUUGu---CCCG- -5'
26655 3' -56.9 NC_005808.1 + 20300 0.68 0.39284
Target:  5'- uAGCGGGUUGCuCggcGGCCGGuuGCGaugcGGGCu -3'
miRNA:   3'- -UCGUCUAGCGuGa--CCGGCU--UGU----CCCG- -5'
26655 3' -56.9 NC_005808.1 + 2716 0.69 0.374735
Target:  5'- cGCaAGAccUCGCACggcaaGcGCCGGACguGGGGCu -3'
miRNA:   3'- uCG-UCU--AGCGUGa----C-CGGCUUG--UCCCG- -5'
26655 3' -56.9 NC_005808.1 + 24824 0.69 0.365897
Target:  5'- uGGCAGGUCauuccgacaGCAUgggucgaGGCCGcGCAGGcGCg -3'
miRNA:   3'- -UCGUCUAG---------CGUGa------CCGGCuUGUCC-CG- -5'
26655 3' -56.9 NC_005808.1 + 25755 0.69 0.348656
Target:  5'- cGCuGggCGCGCU-GCUGGGCGGcGGCa -3'
miRNA:   3'- uCGuCuaGCGUGAcCGGCUUGUC-CCG- -5'
26655 3' -56.9 NC_005808.1 + 26233 0.69 0.340255
Target:  5'- cGCAGuuuugCGCGCgucGCCGAagGCAcGGGCa -3'
miRNA:   3'- uCGUCua---GCGUGac-CGGCU--UGU-CCCG- -5'
26655 3' -56.9 NC_005808.1 + 1088 0.7 0.31594
Target:  5'- cGGUAGAUUGCcUUGGCCGugucGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCGuGACCGGCu---UGUcCCG- -5'
26655 3' -56.9 NC_005808.1 + 26801 0.7 0.31594
Target:  5'- cAGCGGG-CGCGCUGGCgGuGGCccGGCu -3'
miRNA:   3'- -UCGUCUaGCGUGACCGgC-UUGucCCG- -5'
26655 3' -56.9 NC_005808.1 + 6264 0.7 0.308132
Target:  5'- uGCGGuugaucugCGCGCUgggcaGGCCGAACAGGucGCc -3'
miRNA:   3'- uCGUCua------GCGUGA-----CCGGCUUGUCC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.