miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26655 5' -56.8 NC_005808.1 + 34042 0.66 0.536124
Target:  5'- cUGUCGCUGccCGCCAuCGGCGcGGCu -3'
miRNA:   3'- uACGGUGACaaGCGGU-GCCGCcUUGu -5'
26655 5' -56.8 NC_005808.1 + 25751 0.66 0.536124
Target:  5'- -aGCaCGCUGggcgCGCUgcuggGCGGCGGcAACGa -3'
miRNA:   3'- uaCG-GUGACaa--GCGG-----UGCCGCC-UUGU- -5'
26655 5' -56.8 NC_005808.1 + 10979 0.66 0.525273
Target:  5'- -gGCCAcCUGUUCgGCCA-GGcCGGAuuGCAu -3'
miRNA:   3'- uaCGGU-GACAAG-CGGUgCC-GCCU--UGU- -5'
26655 5' -56.8 NC_005808.1 + 7983 0.67 0.482777
Target:  5'- -cGCCGgUGUUCGCCcuCGGCaagaugGGAGgCAa -3'
miRNA:   3'- uaCGGUgACAAGCGGu-GCCG------CCUU-GU- -5'
26655 5' -56.8 NC_005808.1 + 26117 0.67 0.47241
Target:  5'- -cGCCAUgccggcaugUGUUCGUCGCGGCaGAuuuggcGCAg -3'
miRNA:   3'- uaCGGUG---------ACAAGCGGUGCCGcCU------UGU- -5'
26655 5' -56.8 NC_005808.1 + 17540 0.67 0.442009
Target:  5'- -cGCCGCUGUUCgugcagGCCcUGGCGuGGCAc -3'
miRNA:   3'- uaCGGUGACAAG------CGGuGCCGCcUUGU- -5'
26655 5' -56.8 NC_005808.1 + 2044 0.68 0.422368
Target:  5'- -aGCCACUGgcagguggCGCC-CGuaucGCGGGGCAu -3'
miRNA:   3'- uaCGGUGACaa------GCGGuGC----CGCCUUGU- -5'
26655 5' -56.8 NC_005808.1 + 38551 0.68 0.403261
Target:  5'- -gGCCGCUGgccugccgcUCGCCGCGGcCGGc--- -3'
miRNA:   3'- uaCGGUGACa--------AGCGGUGCC-GCCuugu -5'
26655 5' -56.8 NC_005808.1 + 1361 0.68 0.38471
Target:  5'- -cGCC-CUGggCGCgGCGGUGuGGGCGg -3'
miRNA:   3'- uaCGGuGACaaGCGgUGCCGC-CUUGU- -5'
26655 5' -56.8 NC_005808.1 + 11845 0.69 0.349343
Target:  5'- -cGCCGCgGUUgGCCugGGCG-AACc -3'
miRNA:   3'- uaCGGUGaCAAgCGGugCCGCcUUGu -5'
26655 5' -56.8 NC_005808.1 + 22114 0.69 0.332548
Target:  5'- --cCCACUGUUccagcgCGCCGCGGUcGAACAg -3'
miRNA:   3'- uacGGUGACAA------GCGGUGCCGcCUUGU- -5'
26655 5' -56.8 NC_005808.1 + 22576 0.69 0.332548
Target:  5'- uGUGCCGCUucUCGCCGCGGUu--GCGa -3'
miRNA:   3'- -UACGGUGAcaAGCGGUGCCGccuUGU- -5'
26655 5' -56.8 NC_005808.1 + 9496 0.69 0.332548
Target:  5'- cAUGCCAgcCUGUUcCGCCGUGGC-GAACAg -3'
miRNA:   3'- -UACGGU--GACAA-GCGGUGCCGcCUUGU- -5'
26655 5' -56.8 NC_005808.1 + 489 0.7 0.316354
Target:  5'- gAUGCCucggcagcauACUG--CGCCGCGGCGGcuuGCAg -3'
miRNA:   3'- -UACGG----------UGACaaGCGGUGCCGCCu--UGU- -5'
26655 5' -56.8 NC_005808.1 + 36808 0.7 0.316354
Target:  5'- cUGgCGCUGc-CGCgAUGGCGGGACAc -3'
miRNA:   3'- uACgGUGACaaGCGgUGCCGCCUUGU- -5'
26655 5' -56.8 NC_005808.1 + 16425 0.7 0.308483
Target:  5'- -gGCCGCgggGUaaUCGCCgGCGGCGuuGAACAc -3'
miRNA:   3'- uaCGGUGa--CA--AGCGG-UGCCGC--CUUGU- -5'
26655 5' -56.8 NC_005808.1 + 30672 0.7 0.300762
Target:  5'- -gGCCGCUGggUGUagGCGGCGGGAa- -3'
miRNA:   3'- uaCGGUGACaaGCGg-UGCCGCCUUgu -5'
26655 5' -56.8 NC_005808.1 + 22196 0.72 0.244338
Target:  5'- cGUGCaaagcCUGUUCGaCCGCGGCgcgcuGGAACAg -3'
miRNA:   3'- -UACGgu---GACAAGC-GGUGCCG-----CCUUGU- -5'
26655 5' -56.8 NC_005808.1 + 2226 0.72 0.218987
Target:  5'- -cGCaACUGUUCGCCaacguguACGGCGGcGCGg -3'
miRNA:   3'- uaCGgUGACAAGCGG-------UGCCGCCuUGU- -5'
26655 5' -56.8 NC_005808.1 + 9574 1.07 0.00062
Target:  5'- gAUGCCACUGUUCGCCACGGCGGAACAg -3'
miRNA:   3'- -UACGGUGACAAGCGGUGCCGCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.