Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26656 | 3' | -60.7 | NC_005808.1 | + | 26737 | 0.67 | 0.348503 |
Target: 5'- gGgCCACCGCcAGCg---CGCCCGCu -3' miRNA: 3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 24729 | 0.67 | 0.346058 |
Target: 5'- gGCCCGCgGCGGGCGcgacaacaccauccUGCCCGCc -3' miRNA: 3'- gCGGGUGgUGCUCGUcaa-----------GCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 25366 | 0.67 | 0.332436 |
Target: 5'- aGCCgGCCAcCGGGCAGg-CGCCagaaGCc -3' miRNA: 3'- gCGGgUGGU-GCUCGUCaaGCGGg---CGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 16596 | 0.67 | 0.332436 |
Target: 5'- gGCCgACCACGcgauGguGUUgGCgCCGCc -3' miRNA: 3'- gCGGgUGGUGCu---CguCAAgCG-GGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 3558 | 0.67 | 0.348503 |
Target: 5'- uGCgUACUgguacaGCGGGCcGUcgaacUCGCCCGCGa -3' miRNA: 3'- gCGgGUGG------UGCUCGuCA-----AGCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 3795 | 0.67 | 0.332436 |
Target: 5'- uGCCCACCACcGGCGugaacggcacGggCGCCacgaGCGc -3' miRNA: 3'- gCGGGUGGUGcUCGU----------CaaGCGGg---CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 35673 | 0.67 | 0.340401 |
Target: 5'- gGCUuucaCACgCGCGAGCGGgUCGgCUCGCGu -3' miRNA: 3'- gCGG----GUG-GUGCUCGUCaAGC-GGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 42499 | 0.67 | 0.31692 |
Target: 5'- uGCCCaagcuGCCGCGcGCAGaaUGCCgGCGu -3' miRNA: 3'- gCGGG-----UGGUGCuCGUCaaGCGGgCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 9265 | 0.67 | 0.340401 |
Target: 5'- gCGCCgCGCCGcCGAGCAGgccaacgUCGaCgGCGc -3' miRNA: 3'- -GCGG-GUGGU-GCUCGUCa------AGCgGgCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 11125 | 0.67 | 0.309369 |
Target: 5'- gGUUCAaacgUGCGAGCAGUUCGgCCUGCu -3' miRNA: 3'- gCGGGUg---GUGCUCGUCAAGC-GGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 402 | 0.67 | 0.309369 |
Target: 5'- gCGCCCACCagcagcACG-GCGGUgaUCGUCgGCc -3' miRNA: 3'- -GCGGGUGG------UGCuCGUCA--AGCGGgCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 9723 | 0.67 | 0.309369 |
Target: 5'- aCGCCUcgaaGCCGCGGGCGaacUGCUCGUGg -3' miRNA: 3'- -GCGGG----UGGUGCUCGUcaaGCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 31719 | 0.67 | 0.324609 |
Target: 5'- aGCCCGCCGCGcGCGGgcuuuuucaCGCCUaaaaauauGCGc -3' miRNA: 3'- gCGGGUGGUGCuCGUCaa-------GCGGG--------CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 6740 | 0.67 | 0.324609 |
Target: 5'- gGgCCGCCGCGcucaauAGCggaaaggucuuuAGUUUGCCCGCc -3' miRNA: 3'- gCgGGUGGUGC------UCG------------UCAAGCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 4898 | 0.67 | 0.332436 |
Target: 5'- gGCCUcguuuucgGCCACGguggaaacgucGGCAGcgaUGCCCGCGa -3' miRNA: 3'- gCGGG--------UGGUGC-----------UCGUCaa-GCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 25826 | 0.67 | 0.31692 |
Target: 5'- uCGUugCCGCCGCccAGCAGcgCGCCCaGCGu -3' miRNA: 3'- -GCG--GGUGGUGc-UCGUCaaGCGGG-CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 16217 | 0.68 | 0.266945 |
Target: 5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3' miRNA: 3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 24774 | 0.68 | 0.301956 |
Target: 5'- uGaCCUGCCACGGGUcGUccUCgauGCCCGCGu -3' miRNA: 3'- gC-GGGUGGUGCUCGuCA--AG---CGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 26430 | 0.68 | 0.301956 |
Target: 5'- uGCCCucgACCuCGuGCAGUUCGCggaUGCGc -3' miRNA: 3'- gCGGG---UGGuGCuCGUCAAGCGg--GCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 11241 | 0.68 | 0.301956 |
Target: 5'- aCGCCCACUAgCGuGGCgaugagGGUUUGCgCUGCGg -3' miRNA: 3'- -GCGGGUGGU-GC-UCG------UCAAGCG-GGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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