Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26656 | 3' | -60.7 | NC_005808.1 | + | 24576 | 0.66 | 0.373625 |
Target: 5'- gGCCgGCCACGGuCGGgcCGUCCgGCGu -3' miRNA: 3'- gCGGgUGGUGCUcGUCaaGCGGG-CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 17847 | 0.66 | 0.373625 |
Target: 5'- uGCCCGCCACcguGGCcucgUCGCCCa-- -3' miRNA: 3'- gCGGGUGGUGc--UCGuca-AGCGGGcgc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 25241 | 0.66 | 0.365116 |
Target: 5'- aGCCCAUgACGAagcGCAccugUUGCUCGCGc -3' miRNA: 3'- gCGGGUGgUGCU---CGUca--AGCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 27418 | 0.66 | 0.365116 |
Target: 5'- uCGCgCGCCugGcGCAccgCGCCCgGCGg -3' miRNA: 3'- -GCGgGUGGugCuCGUcaaGCGGG-CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 37989 | 0.66 | 0.356741 |
Target: 5'- cCGCCgacaucauCGCCGaggcCGAGCAGUuccUCGCCUgGCGc -3' miRNA: 3'- -GCGG--------GUGGU----GCUCGUCA---AGCGGG-CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 26327 | 0.66 | 0.399948 |
Target: 5'- aGCCgACCAgGccGGCGGgu-GCCCGUGc -3' miRNA: 3'- gCGGgUGGUgC--UCGUCaagCGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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